Browse Element(s) Details


Os.7486.1.S1_at

Description gb:AK105673.1
DB_XREF= gi:32990882
TID=Os.7486.1
CNT=26
FEA=FLmRNA
TIER=FL+Stack
STK=11
UG=Os.7486 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-201-A09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-201-A09, full insert sequence.
FL= gb:AK105673.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3333011/11metallopeptidase family M24 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g33290Os.35344.3.S1_x_at9/1111+19185955..19190729Transposable element protein, putative, MuDR
LOC_Os11g33290OsAffx.22940.2.S1_s_at8/1111+19185955..19190729Transposable element protein, putative, MuDR
LOC_Os11g33290Os.35344.18.S1_x_at8/1111+19185955..19190729Transposable element protein, putative, MuDR
LOC_Os11g33290OsAffx.22940.3.S1_x_at6/1111+19185955..19190729Transposable element protein, putative, MuDR
LOC_Os11g33290OsAffx.22940.5.S1_x_at4/1111+19185955..19190729Transposable element protein, putative, MuDR
LOC_Os11g33290OsAffx.22940.1.S1_s_at2/1111+19185955..19190729Transposable element protein, putative, MuDR
LOC_Os11g33300OsAffx.19143.1.S1_at11/1111+19193297..19194862O-methyltransferase family protein
LOC_Os11g33310OsAffx.7285.1.S1_at10/1111+19199709..19201822F-box domain containing protein
LOC_Os11g33310OsAffx.24652.1.S1_x_at1/1111+19199709..19201822F-box domain containing protein
LOC_Os11g33320Os.22939.1.A1_at4/1111+19205395..19207533F-box domain containing protein, expressed
LOC_Os11g33330Os.7486.1.S1_at11/1111+19208196..19216868metallopeptidase family M24 containing protein, expressed
LOC_Os11g33330Os.51301.1.S1_x_at5/1111+19208196..19216868metallopeptidase family M24 containing protein, expressed
LOC_Os11g33340Os.25454.1.S1_at11/1111+19221535..19232912metallopeptidase family M24 containing protein, expressed
LOC_Os11g33340Os.51301.1.S1_x_at3/1111+19221535..19232912metallopeptidase family M24 containing protein, expressed
LOC_Os11g33349NANA11+19234418..19234807NA
LOC_Os11g33360OsAffx.19144.1.S1_at10/1111+19240933..19242597hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0009926biological_processauxin polar transport
GO:0005886cellular_componentplasma membrane
GO:0004177molecular_functionaminopeptidase activity
GO:0009983molecular_functiontyrosine aminopeptidase activity
GO:0010013molecular_functionN-1-naphthylphthalamic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7486.1.S1_at--1158--2551Chr11:19208676..19208700 (25 bp)
AACTGATAGACACCACTTTGCTGAC
LOC_Os11g33330
Os.7486.1.S1_at--1037--8611Chr11:19208635..19208659 (25 bp)
TGGGTAAACGCATATCACGCAGATT
LOC_Os11g33330
Os.7486.1.S1_at--579--91Chr11:19208602..19208626 (25 bp)
ATTCTGCAACCATACCTGAACGAGC
LOC_Os11g33330
Os.7486.1.S1_at--202--8931Chr11:19208549..19208573 (25 bp)
TGAGCCTATCGCTGTGAGCTGCTGT
LOC_Os11g33330
Os.7486.1.S1_at--1105--5891Chr11:19208534..19208558 (25 bp)
GAGCTGCTGTTAAACCATCAACTAG
LOC_Os11g33330
Os.7486.1.S1_at--1054--1611Chr11:19208511..19208535 (25 bp)
AGCTGGTTGGCTCTACATGGACACA
LOC_Os11g33330
Os.7486.1.S1_at--875--5611Chr11:19208442..19208466 (25 bp)
GACAAACGATTTGTGGCGTGCCATG
LOC_Os11g33330
Os.7486.1.S1_at--589--8651Chr11:19208431..19208455 (25 bp)
TGTGGCGTGCCATGCGTAGATAAAT
LOC_Os11g33330
Os.7486.1.S1_at--91--331Chr11:19208412..19208436 (25 bp)
ATAAATGGTTATCCCGCAATTCAAT
LOC_Os11g33330
Os.7486.1.S1_at--97--531Chr11:19208355..19208379 (25 bp)
ATCGCAATTGATTCTTTGGCTTGTC
LOC_Os11g33330
Os.7486.1.S1_at--637--10651Chr11:19208277..19208301 (25 bp)
TTCCCTCCCATGAATCTGCAGGTTT
LOC_Os11g33330
Target Sequence 
AACTGATAGACACCACTTTGCTGACCCCGGCCGAGATTGAATGGGTAAACGCATATCACGCAGATTGCCGAAAAATTCTG
CAACCATACCTGAACGAGCAGGAGAAGGAATGGCTGAGGAAAGCTACTGAGCCTATCGCTGTGAGCTGCTGTTAAACCAT
CAACTAGCTGGTTGGCTCTACATGGACACATGGCACAGGGTCTCGACCGGCCATTCGTGCTAGATGTGCAGAACGACAAA
CGATTTGTGGCGTGCCATGCGTAGATAAATGGTTATCCCGCAATTCAATTGCTTGCAATAAGTGTGAACAGCAGAATAAA
CATCGCAATTGATTCTTTGGCTTGTCATGNTGCTGAGNNGTTCATGTGAGGGACNTAGAAATAAAGCTAGGACTGGAAAG
CTTCCCTCCCATGAATCTGCAGGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7486.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis