Browse Element(s) Details


OsAffx.31282.1.S1_x_at

Description tigr:9639.m03040
TID=OsAffx.31282.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3338011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g33340Os.25454.1.S1_at11/1111+19221535..19232912metallopeptidase family M24 containing protein, expressed
LOC_Os11g33340Os.51301.1.S1_x_at3/1111+19221535..19232912metallopeptidase family M24 containing protein, expressed
LOC_Os11g33349NANA11+19234418..19234807NA
LOC_Os11g33360OsAffx.19144.1.S1_at10/1111+19240933..19242597hypothetical protein
LOC_Os11g33370OsAffx.19145.1.S1_at11/1111+19247328..19248530hypothetical protein
LOC_Os11g33370OsAffx.19145.1.S1_x_at11/1111+19247328..19248530hypothetical protein
LOC_Os11g33380OsAffx.31282.1.S1_at11/1111+19252472..19252690expressed protein
LOC_Os11g33380OsAffx.31282.1.S1_x_at11/1111+19252472..19252690expressed protein
LOC_Os11g33394Os.35907.1.S1_at11/1111+19255049..19261086expressed protein
LOC_Os11g33394OsAffx.31283.1.S1_at9/1111+19255049..19261086expressed protein
LOC_Os11g33410OsAffx.31284.1.S1_at11/1111+19270802..19271786hypothetical protein
LOC_Os11g33410OsAffx.19224.1.S1_at1/1111+19270802..19271786hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31282.1.S1_x_at--1054--8011Chr11:19252504..19252528 (25 bp)
GGAGGTGGCCCTGGCGAGAGGCTCT
LOC_Os11g33380
OsAffx.31282.1.S1_x_at--143--1331Chr11:19252520..19252544 (25 bp)
AGAGGCTCTGGCGACAAGGTGTTCG
LOC_Os11g33380
OsAffx.31282.1.S1_x_at--497--5831Chr11:19252562..19252586 (25 bp)
GACCTCAAGTCGTTCAGGGTCCAGG
LOC_Os11g33380
OsAffx.31282.1.S1_x_at--871--1051Chr11:19252577..19252601 (25 bp)
AGGGTCCAGGCGTTCGATGAGCACA
LOC_Os11g33380
OsAffx.31282.1.S1_x_at--53--7711Chr11:19252578..19252602 (25 bp)
GGGTCCAGGCGTTCGATGAGCACAA
LOC_Os11g33380
OsAffx.31282.1.S1_x_at--314--9231Chr11:19252581..19252605 (25 bp)
TCCAGGCGTTCGATGAGCACAAGGT
LOC_Os11g33380
OsAffx.31282.1.S1_x_at--965--691Chr11:19252593..19252617 (25 bp)
ATGAGCACAAGGTGATCGACGGCGT
LOC_Os11g33380
OsAffx.31282.1.S1_x_at--42--3931Chr11:19252612..19252636 (25 bp)
CGGCGTCCGCGACAAGAACCTCATT
LOC_Os11g33380
OsAffx.31282.1.S1_x_at--288--2751Chr11:19252625..19252649 (25 bp)
AAGAACCTCATTGACAGCGGCATGT
LOC_Os11g33380
OsAffx.31282.1.S1_x_at--824--5431Chr11:19252627..19252651 (25 bp)
GAACCTCATTGACAGCGGCATGTCA
LOC_Os11g33380
OsAffx.31282.1.S1_x_at--78--8951Chr11:19252636..19252660 (25 bp)
TGACAGCGGCATGTCAAGGAACGTG
LOC_Os11g33380
Target Sequence 
GGAGGTGGCCCTGGCGAGAGGCTCTGGCGACAAGGTGTTCGGCAAGAAGGGGTCATGGGACCTCAAGTCGTTCAGGGTCC
AGGCGTTCGATGAGCACAAGGTGATCGACGGCGTCCGCGACAAGAACCTCATTGACAGCGGCATGTCAAGGAACGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31282.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis