Browse Element(s) Details


OsAffx.31283.1.S1_at

Description tigr:9639.m03041
TID=OsAffx.31283.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g333949/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g33340Os.25454.1.S1_at11/1111+19221535..19232912metallopeptidase family M24 containing protein, expressed
LOC_Os11g33340Os.51301.1.S1_x_at3/1111+19221535..19232912metallopeptidase family M24 containing protein, expressed
LOC_Os11g33349NANA11+19234418..19234807NA
LOC_Os11g33360OsAffx.19144.1.S1_at10/1111+19240933..19242597hypothetical protein
LOC_Os11g33370OsAffx.19145.1.S1_at11/1111+19247328..19248530hypothetical protein
LOC_Os11g33370OsAffx.19145.1.S1_x_at11/1111+19247328..19248530hypothetical protein
LOC_Os11g33380OsAffx.31282.1.S1_at11/1111+19252472..19252690expressed protein
LOC_Os11g33380OsAffx.31282.1.S1_x_at11/1111+19252472..19252690expressed protein
LOC_Os11g33394Os.35907.1.S1_at11/1111+19255049..19261086expressed protein
LOC_Os11g33394OsAffx.31283.1.S1_at9/1111+19255049..19261086expressed protein
LOC_Os11g33410OsAffx.31284.1.S1_at11/1111+19270802..19271786hypothetical protein
LOC_Os11g33410OsAffx.19224.1.S1_at1/1111+19270802..19271786hypothetical protein
LOC_Os11g33420NANA11+19279232..19280999transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g33430OsAffx.7286.1.S1_at11/1111+19282924..19285537expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31283.1.S1_at--1142--551NONE
ATCCTGACACTGAGGTGTTGGATTT
NONE
OsAffx.31283.1.S1_at--1051--6611Chr11:19256336..19256360 (25 bp)
GTTGGATTTGGTAACCAGCACCATG
LOC_Os11g33394
OsAffx.31283.1.S1_at--529--1511Chr11:19256352..19256376 (25 bp)
AGCACCATGCAGGTGGCACCTATGA
LOC_Os11g33394
OsAffx.31283.1.S1_at--583--3471Chr11:19256361..19256385 (25 bp)
CAGGTGGCACCTATGAGTATTGTCA
LOC_Os11g33394
OsAffx.31283.1.S1_at--979--6071Chr11:19256375..19256399 (25 bp)
GAGTATTGTCAATGGTGCTGATTCA
LOC_Os11g33394
OsAffx.31283.1.S1_at--147--9133Chr11:19256390..19256414 (25 bp)
TGCTGATTCAAGAACCGGCACCTTT
LOC_Os11g33394
OsAffx.31283.1.S1_at--47--3951Chr03:24215311..24215438 (25 bp)
CGGCACCTTTGAGGCTCGATTGAAT
NONE
OsAffx.31283.1.S1_at--1159--8711Chr11:19258273..19258297 (25 bp)
TGAGGATGCAAATTGGACTTTAACG
LOC_Os11g33394
OsAffx.31283.1.S1_at--507--9791Chr11:19258309..19258333 (25 bp)
TAAGCCAGAAACAGAGAAGACCCAA
LOC_Os11g33394
OsAffx.31283.1.S1_at--194--131Chr11:19258344..19258368 (25 bp)
ATTCAGACTTTTCCATATTCGGCCG
LOC_Os11g33394
OsAffx.31283.1.S1_at--761--5691Chr11:19258349..19258373 (25 bp)
GACTTTTCCATATTCGGCCGAAACA
LOC_Os11g33394
Target Sequence 
ATCCTGACACTGAGGTGTTGGATTTGGTAACCAGCACCATGCAGGTGGCACCTATGAGTATTGTCAATGGTGCTGATTCA
AGAACCGGCACCTTTGAGGCTCGATTGAATGAGGATGCAAATTGGACTTTAACGGAGAAAGGAAATAAGCCAGAAACAGA
GAAGACCCAAAAAGGAGAAAATTCAGACTTTTCCATATTCGGCCGAAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31283.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis