Browse Element(s) Details


Os.35907.1.S1_at

Description gb:AK065177.1
DB_XREF= gi:32975195
TID=Os.35907.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35907 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013002D11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002D11, full insert sequence.
FL= gb:AK065177.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3339411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g33340Os.25454.1.S1_at11/1111+19221535..19232912metallopeptidase family M24 containing protein, expressed
LOC_Os11g33340Os.51301.1.S1_x_at3/1111+19221535..19232912metallopeptidase family M24 containing protein, expressed
LOC_Os11g33349NANA11+19234418..19234807NA
LOC_Os11g33360OsAffx.19144.1.S1_at10/1111+19240933..19242597hypothetical protein
LOC_Os11g33370OsAffx.19145.1.S1_at11/1111+19247328..19248530hypothetical protein
LOC_Os11g33370OsAffx.19145.1.S1_x_at11/1111+19247328..19248530hypothetical protein
LOC_Os11g33380OsAffx.31282.1.S1_at11/1111+19252472..19252690expressed protein
LOC_Os11g33380OsAffx.31282.1.S1_x_at11/1111+19252472..19252690expressed protein
LOC_Os11g33394Os.35907.1.S1_at11/1111+19255049..19261086expressed protein
LOC_Os11g33394OsAffx.31283.1.S1_at9/1111+19255049..19261086expressed protein
LOC_Os11g33410OsAffx.31284.1.S1_at11/1111+19270802..19271786hypothetical protein
LOC_Os11g33410OsAffx.19224.1.S1_at1/1111+19270802..19271786hypothetical protein
LOC_Os11g33420NANA11+19279232..19280999transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g33430OsAffx.7286.1.S1_at11/1111+19282924..19285537expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35907.1.S1_at--54--5331Chr11:19260559..19260583 (25 bp)
GAAGTGACCGCGTTCGTGTCATTCA
LOC_Os11g33394
Os.35907.1.S1_at--122--9431Chr11:19260572..19260596 (25 bp)
TCGTGTCATTCATGGACGACCTCAT
LOC_Os11g33394
Os.35907.1.S1_at--26--2471Chr11:19260685..19260709 (25 bp)
AACAACACGCTGACGAAAGGCTCGG
LOC_Os11g33394
Os.35907.1.S1_at--267--2311Chr11:19260700..19260724 (25 bp)
AAAGGCTCGGTGATGGACGAAGACA
LOC_Os11g33394
Os.35907.1.S1_at--480--8531Chr11:19260713..19260737 (25 bp)
TGGACGAAGACAGCAGCCTCAACGA
LOC_Os11g33394
Os.35907.1.S1_at--1085--5071Chr11:19260725..19260749 (25 bp)
GCAGCCTCAACGACGTGATGTCGGA
LOC_Os11g33394
Os.35907.1.S1_at--94--9191Chr11:19260756..19260780 (25 bp)
TGCCTACTGCAAGATGCGGCGGAAC
LOC_Os11g33394
Os.35907.1.S1_at--394--8171Chr11:19260776..19260800 (25 bp)
GGAACAGGTGGAGGGCCATCCTCCT
LOC_Os11g33394
Os.35907.1.S1_at--905--271Chr11:19260988..19261012 (25 bp)
ATAGTTAGTATATTTGAGCCAAGAA
LOC_Os11g33394
Os.35907.1.S1_at--974--1671Chr11:19261004..19261028 (25 bp)
AGCCAAGAATTATCCGAAGTACTCT
LOC_Os11g33394
Os.35907.1.S1_at--1103--10411Chr11:19261013..19261037 (25 bp)
TTATCCGAAGTACTCTTGCTTTTAT
LOC_Os11g33394
Target Sequence 
GAAGTGACCGCGTTCGTGTCATTCATGGACGACCTCATCAACACGGCCAAGGACGTGCGGCTGCTGAGGGCCAAGGAGAT
CATCGAGAGCGGCTTGGGNAGCGACGAGGCGGTGGCNAATCTGATCAACAACACGCTGACGAAAGGCTCGGTGATGGACG
AAGACAGCAGCCTCAACGACGTGATGTCGGAAGTGGATGCCTACTGCAAGATGCGGCGGAACAGGTGGAGGGCCATCCTC
CTACACACCTACTTCAGTAACCCTTGGGTGTTCATCTCCCTCGTCGCNGCTACTGTCCTGCTCATTGCNACTGTCATCCA
NACTGTCTACGCTATCCTGTCCTTCANCAGCAAGACCTAATNAAAACCTTGCACCATGGTAAATTCCATGAACATATATT
CATTCNTNNTTCAGGCCTCGCAGCTTAATNNNNAATAGTTAGTATATTTGAGCCAAGAATTATCCGAAGTACTCTTGCTT
TTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35907.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis