Browse Element(s) Details


OsAffx.31284.1.S1_at

Description tigr:9639.m03043
TID=OsAffx.31284.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3341011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g33370OsAffx.19145.1.S1_at11/1111+19247328..19248530hypothetical protein
LOC_Os11g33370OsAffx.19145.1.S1_x_at11/1111+19247328..19248530hypothetical protein
LOC_Os11g33380OsAffx.31282.1.S1_at11/1111+19252472..19252690expressed protein
LOC_Os11g33380OsAffx.31282.1.S1_x_at11/1111+19252472..19252690expressed protein
LOC_Os11g33394Os.35907.1.S1_at11/1111+19255049..19261086expressed protein
LOC_Os11g33394OsAffx.31283.1.S1_at9/1111+19255049..19261086expressed protein
LOC_Os11g33410OsAffx.31284.1.S1_at11/1111+19270802..19271786hypothetical protein
LOC_Os11g33410OsAffx.19224.1.S1_at1/1111+19270802..19271786hypothetical protein
LOC_Os11g33420NANA11+19279232..19280999transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g33430OsAffx.7286.1.S1_at11/1111+19282924..19285537expressed protein
LOC_Os11g33440OsAffx.32166.1771.S1_s_at2/1111+19287520..19289684expressed protein
LOC_Os11g33450OsAffx.7287.1.S1_at11/1111+19290514..19294285hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31284.1.S1_at--970--6531Chr11:19271665..19271689 (25 bp)
GATTATTCCTAGAGGCCGTCAGCTT
LOC_Os11g33410
OsAffx.31284.1.S1_at--52--4251Chr11:19271650..19271674 (25 bp)
CCGTCAGCTTCGAGGGAGGCATAAC
LOC_Os11g33410
OsAffx.31284.1.S1_at--90--4571Chr11:19271599..19271623 (25 bp)
GCGCCGAGCACACATTCTTTAGAGA
LOC_Os11g33410
OsAffx.31284.1.S1_at--905--1311Chr11:19271394..19271418 (25 bp)
AGATGGCGTTCGAGTGGCTTCACCC
LOC_Os11g33410
OsAffx.31284.1.S1_at--1107--6371Chr11:19271339..19271363 (25 bp)
GATCGCGTTCGTGTGCTTCATGGAC
LOC_Os11g33410
OsAffx.31284.1.S1_at--969--8651Chr11:19271291..19271315 (25 bp)
TGTGGCGCTAGCTGCAGAGGTCCAA
LOC_Os11g33410
OsAffx.31284.1.S1_at--822--5991Chr11:19271202..19271226 (25 bp)
GAGACGCGGTGCTGATGAGCCCCAA
LOC_Os11g33410
OsAffx.31284.1.S1_at--730--1611Chr11:19271171..19271195 (25 bp)
AGCGGCCTCTGCAGGGACGTGATAC
LOC_Os11g33410
OsAffx.31284.1.S1_at--522--2131Chr11:19271111..19271135 (25 bp)
ACAGGGTGCCGATCGAGATGGTCTC
LOC_Os11g33410
OsAffx.31284.1.S1_at--628--8091Chr11:19271010..19271034 (25 bp)
GGACCATCTACACTACACTGTACAG
LOC_Os11g33410
OsAffx.31284.1.S1_at--1024--8731Chr11:19270992..19271016 (25 bp)
TGTACAGCTGTACTGCCATTCTACA
LOC_Os11g33410
Target Sequence 
GATTATTCCTAGAGGCCGTCAGCTTCGAGGGAGGCATAACCATCCCCTACATCTGGCGGTACATCAGCGCCGAGCACACA
TTCTTTAGAGATTTACTCCGATCCAATAAAAAATGTCCAGATGGCGTTCGAGTGGCTTCACCCAGGCGGCACAGGGAACA
ACAACAACAACGTGATCGCGTTCGTGTGCTTCATGGACCAGCTCATCAACGCGACCGACGATGTGGCGCTAGCTGCAGAG
GTCCAAGGGGGATCATCGTCCAGAGCGGTTTGGGCAGCGACGACGTGAAGAAGGCCCTCGACTCGAGAGAGAGACGCGGT
GCTGATGAGCCCCAAGACAAGAGCGGCCTCTGCAGGGACGTGATACGGGAGGTGAACGCGCGCACCGCGAGAAGCCGTGG
AACAGGGTGCCGATCGAGATGGTCTCGTGCACACCTACTTCACTTCAGCAACACCGTGGTTGTTCAGCCCTGCTCTGATC
CTGTTCGTCGTCATCATCGTGCGGACCATCTACACTACACTGTACAGCTGTACTGCCATTCTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31284.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis