Browse Element(s) Details


OsAffx.7287.1.S1_at

Description tigr:9639.m03047
TID=OsAffx.7287.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3345011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g33410OsAffx.31284.1.S1_at11/1111+19270802..19271786hypothetical protein
LOC_Os11g33410OsAffx.19224.1.S1_at1/1111+19270802..19271786hypothetical protein
LOC_Os11g33420NANA11+19279232..19280999transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g33430OsAffx.7286.1.S1_at11/1111+19282924..19285537expressed protein
LOC_Os11g33440OsAffx.32166.1771.S1_s_at2/1111+19287520..19289684expressed protein
LOC_Os11g33450OsAffx.7287.1.S1_at11/1111+19290514..19294285hypothetical protein
LOC_Os11g33454NANA11+19300975..19302210retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g33458NANA11+19304071..19305810retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g33462NANA11+19307927..19308613hypothetical protein
LOC_Os11g33466NANA11+19311928..19313145retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7287.1.S1_at--471--4051Chr11:19293716..19293740 (25 bp)
CGAGGGTTGGCCACAAATTTTGTCA
LOC_Os11g33450
OsAffx.7287.1.S1_at--363--171Chr11:19293732..19293756 (25 bp)
ATTTTGTCATGCCTTGTGCGGCAGA
LOC_Os11g33450
OsAffx.7287.1.S1_at--850--10811Chr11:19293745..19293769 (25 bp)
TTGTGCGGCAGAACTCCACGAGGCA
LOC_Os11g33450
OsAffx.7287.1.S1_at--567--1051Chr11:19293829..19293853 (25 bp)
AGGTGTACTCAGTATTCCTCGGGTC
LOC_Os11g33450
OsAffx.7287.1.S1_at--624--1811Chr11:19293912..19293936 (25 bp)
ACCCAGGCGCCGGAAATGAAGTCAT
LOC_Os11g33450
OsAffx.7287.1.S1_at--690--7991Chr11:19293979..19294003 (25 bp)
GGATGTGGCACTGCTGAGGTCCAAA
LOC_Os11g33450
OsAffx.7287.1.S1_at--849--2311Chr11:19294001..19294025 (25 bp)
AAAGGGATCATCACGAGCGGTCTGG
LOC_Os11g33450
OsAffx.7287.1.S1_at--922--5871Chr11:19294084..19294108 (25 bp)
GAGCCCAGACAGCAGTATACGTGAT
LOC_Os11g33450
OsAffx.7287.1.S1_at--771--9931Chr11:19294113..19294137 (25 bp)
TACGGGAGATAAACGCGCACTGCAA
LOC_Os11g33450
OsAffx.7287.1.S1_at--504--5511Chr11:19294147..19294171 (25 bp)
GAACAAGTGGCGAGCGACCCTTATG
LOC_Os11g33450
OsAffx.7287.1.S1_at--922--5811Chr11:19294162..19294186 (25 bp)
GACCCTTATGCATACGTACTTCAGC
LOC_Os11g33450
Target Sequence 
CGAGGGTTGGCCACAAATTTTGTCATGCCTTGTGCGGCAGAACTCCACGAGGCAGGAATTCATTTCAAGTTGAGTGATAG
AAAGGGATTTGTAGGGGGGGTCAGCTTTGAAGGAGGTGTACTCAGTATTCCTCGGGTCCTCTTCTGGGACAATGCCGAGC
GCGTGTTTCTCAACCTGATGGCATTTGAGCGGCTGCACCCAGGCGCCGGAAATGAAGTCATGGCATTTGTCTACTTTATG
GATAATCTCATTGACACTGCTAAGGATGTGGCACTGCTGAGGTCCAAAGGGATCATCACGAGCGGTCTGGGCAGCGACGA
GGCCGTAGCAAAGCTGATAAACAAGATCCTAACCAAAGGAGCTGTGATGAGCCCAGACAGCAGTATACGTGATGTGCTAC
GGGAGATAAACGCGCACTGCAAGAAGCCGTGGAACAAGTGGCGAGCGACCCTTATGCATACGTACTTCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7287.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis