Browse Element(s) Details


Os.9883.1.A1_at

Description gb:CB662443
DB_XREF= gi:29666168
DB_XREF=OSJNEd06H15.r
CLONE=OSJNEd06H15
TID=Os.9883.1
CNT=5
FEA=EST
TIER=ConsEnd
STK=5
UG=Os.9883 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T47624 (A.thaliana) T47624 hypothetical protein T5N23.10 - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4339010/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g43350OsAffx.25511.1.S1_at11/113+24123273..24125821hypothetical protein
LOC_Os03g43360OsAffx.13323.1.S1_at11/113+24128721..24134539Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g43374NANA3+24138620..24139265retrotransposon protein, putative, unclassified
LOC_Os03g43390Os.9883.2.S1_at11/113+24144016..24151596Leucine Rich Repeat family protein, expressed
LOC_Os03g43390Os.9883.1.A1_at10/113+24144016..24151596Leucine Rich Repeat family protein, expressed
LOC_Os03g43390OsAffx.7847.1.S1_at1/113+24144016..24151596Leucine Rich Repeat family protein, expressed
LOC_Os03g43400OsAffx.25512.1.S1_s_at10/113+24152848..24156220Auxin-responsive protein IAA17, putative, expressed
LOC_Os03g43400OsAffx.25512.1.S1_x_at8/113+24152848..24156220Auxin-responsive protein IAA17, putative, expressed
LOC_Os03g43410Os.9945.1.S1_at11/113+24166753..24168059AUX/IAA family protein, expressed
LOC_Os03g43420Os.6868.1.S1_at11/113+24169440..24173638single-strand binding protein, expressed
LOC_Os03g43430Os.12861.1.S1_at8/113+24174236..24176470twin-arginine translocation protein, TatA/E family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004842molecular_functionubiquitin-protein ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9883.1.A1_at--203--1171NONE
AGTAAGCACCAGCAGGCTCCAGGTT
NONE
Os.9883.1.A1_at--1052--8991Chr03:24151081..24151105 (25 bp)
TGAATGAGTTCGCTGCAGCTGAACC
LOC_Os03g43390
Os.9883.1.A1_at--344--8991Chr03:24151100..24151124 (25 bp)
TGAACCACATCTTCCATGCAAGCGG
LOC_Os03g43390
Os.9883.1.A1_at--499--1031Chr03:24151143..24151167 (25 bp)
AGGGTTCAACTTCCGCAGTTCGCAC
LOC_Os03g43390
Os.9883.1.A1_at--695--1231Chr03:24151159..24151259 (25 bp)
AGTTCGCACAGCAAGAGCCATCGCA
LOC_Os03g43390
Os.9883.1.A1_at--28--10491Chr03:24151279..24151303 (25 bp)
TTAAGGCGGAACCAGTGCACCGTTC
LOC_Os03g43390
Os.9883.1.A1_at--241--1131Chr03:24151292..24151316 (25 bp)
AGTGCACCGTTCATCTTGATTGATA
LOC_Os03g43390
Os.9883.1.A1_at--194--7331Chr03:24151405..24151429 (25 bp)
GTGCATTCGGTGATGTCTCCAGAAC
LOC_Os03g43390
Os.9883.1.A1_at--679--1191Chr03:24151434..24151458 (25 bp)
AGTATCTATGATGCGCTTGTTGTAT
LOC_Os03g43390
Os.9883.1.A1_at--53--7611Chr03:24151470..24151494 (25 bp)
GGGCAACTGTTTCCATTGCTTATGA
LOC_Os03g43390
Os.9883.1.A1_at--813--10652Chr12:7413397..7413788 (25 bp)
TTCCCTGGCCTGAGACTTTGTAAAA
NONE
Target Sequence 
AGTAAGCACCAGCAGGCTCCAGGTTNTGAATGAGTTCGCTGCAGCTGAACCACATCTTCCATGCAAGCGGCTAGCAGATG
GTTCAAAAAGGGTTCAACTTCCGCAGTTCGCACAGCAAGAGCCATCGCAGGACAAAAAGGGGATCGATTTAAGGCGGAAC
CAGTGCACCGTTCATCTTGATTGATAATAACGTAACCAGATGTAGAAACCTGAGCATTGTTATTGTACACATCCTAATTT
TTATAGCACACTGCTGGGAGATTGTTAAGTTGTTGTGCATTCGGTGATGTCTCCAGAACTTATAGTATCTATGATGCGCT
TGTTGTATAAAGTTGCTTTGGGCAACTGTTTCCATTGCTTATGANGTGTGTTTCCCTGGCCTGAGACTTTGTAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9883.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis