Browse Element(s) Details


Os.9945.1.S1_at

Description gb:AK073044.1
DB_XREF= gi:32983067
TID=Os.9945.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9945 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033001E11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033001E11, full insert sequence.
FL= gb:AK073044.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4341011/11AUX/IAA family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g43390Os.9883.2.S1_at11/113+24144016..24151596Leucine Rich Repeat family protein, expressed
LOC_Os03g43390Os.9883.1.A1_at10/113+24144016..24151596Leucine Rich Repeat family protein, expressed
LOC_Os03g43390OsAffx.7847.1.S1_at1/113+24144016..24151596Leucine Rich Repeat family protein, expressed
LOC_Os03g43400OsAffx.25512.1.S1_s_at10/113+24152848..24156220Auxin-responsive protein IAA17, putative, expressed
LOC_Os03g43400OsAffx.25512.1.S1_x_at8/113+24152848..24156220Auxin-responsive protein IAA17, putative, expressed
LOC_Os03g43410Os.9945.1.S1_at11/113+24166753..24168059AUX/IAA family protein, expressed
LOC_Os03g43420Os.6868.1.S1_at11/113+24169440..24173638single-strand binding protein, expressed
LOC_Os03g43430Os.12861.1.S1_at8/113+24174236..24176470twin-arginine translocation protein, TatA/E family protein, expressed
LOC_Os03g43440Os.19815.1.S1_at11/113+24180544..24182129CBL-interacting serine/threonine-protein kinase 11, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009630biological_processgravitropism
GO:0009733biological_processresponse to auxin stimulus
GO:0010102biological_processlateral root morphogenesis
GO:0040008biological_processregulation of growth
GO:0005634cellular_componentnucleus
GO:0005837cellular_component26S proteasome
GO:0008180cellular_componentsignalosome complex
GO:0019005cellular_componentSCF ubiquitin ligase complex
GO:0003700molecular_functiontranscription factor activity
GO:0016564molecular_functiontranscriptional repressor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9945.1.S1_at--986--5811Chr03:24167417..24167441 (25 bp)
GACCTGAGGATGTACAAGGGCTACA
LOC_Os03g43410
Os.9945.1.S1_at--96--8391Chr03:24167561..24167694 (25 bp)
GGCGACGTCCCTTTCGACATGTTCA
LOC_Os03g43410
Os.9945.1.S1_at--488--6751Chr03:24167690..24167714 (25 bp)
GTTCACCAGCACATGCAAGAAGTTG
LOC_Os03g43410
Os.9945.1.S1_at--46--5371Chr03:24167723..24167747 (25 bp)
GAAGAGATCTGAAGCCACAGGGCTA
LOC_Os03g43410
Os.9945.1.S1_at--456--3311Chr03:24167738..24167762 (25 bp)
CACAGGGCTAGGATCACCAAGGCAA
LOC_Os03g43410
Os.9945.1.S1_at--12--6051Chr03:24167789..24167813 (25 bp)
GAGATCGATCGATGCATTCCATCAA
LOC_Os03g43410
Os.9945.1.S1_at--70--4951Chr03:24167802..24167826 (25 bp)
GCATTCCATCAACTTTTCATTTCTT
LOC_Os03g43410
Os.9945.1.S1_at--564--3651Chr03:24167896..24167920 (25 bp)
CTTCTGCTTTGTTTCCATCTTTAAA
LOC_Os03g43410
Os.9945.1.S1_at--114--6031Chr03:24167969..24167993 (25 bp)
GAGATTTGGGTTCAACTCTCCATGT
LOC_Os03g43410
Os.9945.1.S1_at--14--7691Chr03:24167976..24168000 (25 bp)
GGGTTCAACTCTCCATGTGTATGTA
LOC_Os03g43410
Os.9945.1.S1_at--820--6592Chr04:5698697..5698904 (25 bp)
GATTGTTGGTTACTACTACTATACT
NONE
Target Sequence 
GACCTGAGGATGTACAAGGGCTACAGGGANNTCCGCGAGGCCCTGGAGGCCATGTTCGTCTGCTTCTCCGGCGCCGCCGA
CGGNGCCAACCCGTCGGAGTTCGCCATCACCTACCAGGACAAGGACGGCGACCTCATGCTCGTCGGCGACGTCCCTTTCG
ACATGTTCACCAGCACATGCAAGAAGTTGAGGATCATGAAGAGATCTGAAGCCACAGGGCTAGGATCACCAAGGCAAATG
AAGATCTAATCTAAGAGCGACAAGAGATCGATCGATGCATTCCATCAACTTTTCATTTCTTTTTATTTTTTTTCCTCCCA
AGCCAAAAAGGAGATGAGCTTGGGGGCATCAAAGCAAACACATGGATGTGCTTCTGCTTTGTTTCCATCTTTAAAAACTA
GTAGGTTTTAATTTTATGATTTTAGCAGCACAAAGGAGATGTGGAGATTTGGGTTCAACTCTCCATGTGTATGTACAAAC
GAAACAGTTATTATATATTGATTGTTGGTTACTACTACTATACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9945.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis