Browse Element(s) Details


OsAffx.30710.1.S1_at

Description tigr:9638.m03425
TID=OsAffx.30710.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3813011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g38100OsAffx.21993.2.S1_at11/1110+20077727..20078317hypothetical protein
LOC_Os10g38100OsAffx.21993.2.S1_x_at11/1110+20077727..20078317hypothetical protein
LOC_Os10g38110Os.10360.1.S1_at11/1110+20082346..20086498Cytochrome P450 family protein, expressed
LOC_Os10g38120NANA10+20097289..20100849Cytochrome P450 family protein
LOC_Os10g38130OsAffx.30710.1.S1_at11/1110+20101530..20102038hypothetical protein
LOC_Os10g38140Os.13014.1.S1_a_at11/1110+20102322..20103581Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os10g38150Os.36568.1.S1_x_at11/1110+20104897..20105966glutathione S-transferase parC, putative, expressed
LOC_Os10g38150Os.46637.1.S1_at11/1110+20104897..20105966glutathione S-transferase parC, putative, expressed
LOC_Os10g38160NANA10+20108236..20109794glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38170OsAffx.20181.1.S1_at11/1110+20115593..20116075hypothetical protein
LOC_Os10g38170OsAffx.20181.1.S1_x_at11/1110+20115593..20116075hypothetical protein
LOC_Os10g38189Os.49755.1.S1_at4/1110+20119408..20120356glutathione S-transferase GST 34, putative, expressed
LOC_Os10g38189Os.36568.1.S1_x_at1/1110+20119408..20120356glutathione S-transferase GST 34, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30710.1.S1_at--893--9631Chr10:20101563..20101587 (25 bp)
TCAGGCATGACGCTGCTCACAGCAT
LOC_Os10g38130
OsAffx.30710.1.S1_at--484--691Chr10:20101569..20101593 (25 bp)
ATGACGCTGCTCACAGCATGGGTCA
LOC_Os10g38130
OsAffx.30710.1.S1_at--466--9091Chr10:20101576..20101600 (25 bp)
TGCTCACAGCATGGGTCAGCTACAG
LOC_Os10g38130
OsAffx.30710.1.S1_at--301--791Chr10:20101586..20101610 (25 bp)
ATGGGTCAGCTACAGGGCCAACTTG
LOC_Os10g38130
OsAffx.30710.1.S1_at--497--2131Chr10:20101597..20101621 (25 bp)
ACAGGGCCAACTTGGCTTCGTCGAG
LOC_Os10g38130
OsAffx.30710.1.S1_at--674--6411Chr10:20101637..20101661 (25 bp)
GATCTTCTCCGATCGACTCCTTGAA
LOC_Os10g38130
OsAffx.30710.1.S1_at--557--6391Chr10:20101647..20101671 (25 bp)
GATCGACTCCTTGAACGGCCAATGA
LOC_Os10g38130
OsAffx.30710.1.S1_at--644--2571Chr10:20101660..20101980 (25 bp)
AACGGCCAATGACCAATGGCGGTGA
LOC_Os10g38130
OsAffx.30710.1.S1_at--461--4671Chr10:20101974..20101998 (25 bp)
GCGGTGAGAACTTTGGAGCCTTTTG
LOC_Os10g38130
OsAffx.30710.1.S1_at--1060--5451Chr10:20101981..20102005 (25 bp)
GAACTTTGGAGCCTTTTGGAGCACT
LOC_Os10g38130
OsAffx.30710.1.S1_at--251--3691Chr10:20101984..20102008 (25 bp)
CTTTGGAGCCTTTTGGAGCACTCGT
LOC_Os10g38130
Target Sequence
TCAGGCATGACGCTGCTCACAGCATGGGTCAGCTACAGGGCCAACTTGGCTTCGTCGAGGCCGTTGACGCCGGGGATCTT
CTCCGATCGACTCCTTGAACGGCCAATGACCAATGGCGGTGAGAACTTTGGAGCCTTTTGGAGCACTCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30710.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis