Browse Element(s) Details


Os.46637.1.S1_at

Description gb:CF314573
DB_XREF= gi:33686334
DB_XREF=HD--03-C10.g1
CLONE=HD--03-C10
TID=Os.46637.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.46637 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative glutathione S-transferase (OSJNBb0005J14.23), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3815011/11glutathione S-transferase parC, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g38110Os.10360.1.S1_at11/1110+20082346..20086498Cytochrome P450 family protein, expressed
LOC_Os10g38120NANA10+20097289..20100849Cytochrome P450 family protein
LOC_Os10g38130OsAffx.30710.1.S1_at11/1110+20101530..20102038hypothetical protein
LOC_Os10g38140Os.13014.1.S1_a_at11/1110+20102322..20103581Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os10g38150Os.36568.1.S1_x_at11/1110+20104897..20105966glutathione S-transferase parC, putative, expressed
LOC_Os10g38150Os.46637.1.S1_at11/1110+20104897..20105966glutathione S-transferase parC, putative, expressed
LOC_Os10g38160NANA10+20108236..20109794glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38170OsAffx.20181.1.S1_at11/1110+20115593..20116075hypothetical protein
LOC_Os10g38170OsAffx.20181.1.S1_x_at11/1110+20115593..20116075hypothetical protein
LOC_Os10g38189Os.49755.1.S1_at4/1110+20119408..20120356glutathione S-transferase GST 34, putative, expressed
LOC_Os10g38189Os.36568.1.S1_x_at1/1110+20119408..20120356glutathione S-transferase GST 34, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009407biological_processtoxin catabolism
GO:0005737cellular_componentcytoplasm
GO:0004364molecular_functionglutathione transferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46637.1.S1_at--557--5791Chr10:20105448..20105548 (25 bp)
GACGACAAGCCGGATGATTTTGCTC
LOC_Os10g38150
Os.46637.1.S1_at--925--5611Chr10:20105445..20105465 (21 bp)
GACAAGCCGGATGATTTTGCTCTCA
LOC_Os10g38150
Os.46637.1.S1_at--859--2211Chr10:20105444..20105465 (22 bp)
ACAAGCCGGATGATTTTGCTCTCAT
LOC_Os10g38150
Os.46637.1.S1_at--102--2671Chr10:20105442..20105465 (24 bp)
AAGCCGGATGATTTTGCTCTCATCT
LOC_Os10g38150
Os.46637.1.S1_at--436--4491Chr10:20105440..20105464 (25 bp)
GCCGGATGATTTTGCTCTCATCTTG
LOC_Os10g38150
Os.46637.1.S1_at--333--7991Chr10:20105437..20105461 (25 bp)
GGATGATTTTGCTCTCATCTTGGAT
LOC_Os10g38150
Os.46637.1.S1_at--601--8831Chr10:20105434..20105458 (25 bp)
TGATTTTGCTCTCATCTTGGATAAT
LOC_Os10g38150
Os.46637.1.S1_at--969--10271Chr10:20105430..20105454 (25 bp)
TTTGCTCTCATCTTGGATAATTTGT
LOC_Os10g38150
Os.46637.1.S1_at--812--4811Chr10:20105427..20105451 (25 bp)
GCTCTCATCTTGGATAATTTGTGTG
LOC_Os10g38150
Os.46637.1.S1_at--99--6471Chr10:20105415..20105439 (25 bp)
GATAATTTGTGTGCAGTTTCCTCGG
LOC_Os10g38150
Os.46637.1.S1_at--905--351Chr10:20105414..20105438 (25 bp)
ATAATTTGTGTGCAGTTTCCTCGGG
LOC_Os10g38150
Target Sequence 
GACGACAAGCCGGATGATTTTGCTCTCATCTTGGATAATTTGTGTGCAGTTTCCTCGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46637.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis