Browse Element(s) Details


OsAffx.20181.1.S1_x_at

Description tigr:9638.m03429
TID=OsAffx.20181.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3817011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g38120NANA10+20097289..20100849Cytochrome P450 family protein
LOC_Os10g38130OsAffx.30710.1.S1_at11/1110+20101530..20102038hypothetical protein
LOC_Os10g38140Os.13014.1.S1_a_at11/1110+20102322..20103581Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os10g38150Os.36568.1.S1_x_at11/1110+20104897..20105966glutathione S-transferase parC, putative, expressed
LOC_Os10g38150Os.46637.1.S1_at11/1110+20104897..20105966glutathione S-transferase parC, putative, expressed
LOC_Os10g38160NANA10+20108236..20109794glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38170OsAffx.20181.1.S1_at11/1110+20115593..20116075hypothetical protein
LOC_Os10g38170OsAffx.20181.1.S1_x_at11/1110+20115593..20116075hypothetical protein
LOC_Os10g38189Os.49755.1.S1_at4/1110+20119408..20120356glutathione S-transferase GST 34, putative, expressed
LOC_Os10g38189Os.36568.1.S1_x_at1/1110+20119408..20120356glutathione S-transferase GST 34, putative, expressed
LOC_Os10g38210OsAffx.26050.13.S1_x_at5/1110+20135104..20135529NAD, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20181.1.S1_x_at--1021--1351Chr10:20116016..20116040 (25 bp)
AGAGACGCCCTCCTCAGAGCTCAAG
LOC_Os10g38170
OsAffx.20181.1.S1_x_at--95--6011Chr10:20115985..20116009 (25 bp)
GAGACCATCTACTTTCCATCACCGA
LOC_Os10g38170
OsAffx.20181.1.S1_x_at--244--4391Chr10:20115948..20115972 (25 bp)
GCCAAGAGCGGAGGGCAAACGTCAA
LOC_Os10g38170
OsAffx.20181.1.S1_x_at--75--1871Chr10:20115897..20115921 (25 bp)
ACGACGTTGAGGACATCGCAAAGAT
LOC_Os10g38170
OsAffx.20181.1.S1_x_at--629--4071Chr10:20115837..20115861 (25 bp)
CGACTAGGACACTCTTCATCCACGG
LOC_Os10g38170
OsAffx.20181.1.S1_x_at--630--9611Chr10:20115822..20115846 (25 bp)
TCATCCACGGCCTCGGTTGGAGCAT
LOC_Os10g38170
OsAffx.20181.1.S1_x_at--429--1951Chr10:20115816..20115840 (25 bp)
ACGGCCTCGGTTGGAGCATCGAAGT
LOC_Os10g38170
OsAffx.20181.1.S1_x_at--324--1531Chr10:20115802..20115826 (25 bp)
AGCATCGAAGTCGATGACCTCCACT
LOC_Os10g38170
OsAffx.20181.1.S1_x_at--221--691Chr10:20115789..20115813 (25 bp)
ATGACCTCCACTCCGTGTTTTTCTG
LOC_Os10g38170
OsAffx.20181.1.S1_x_at--883--6811Chr10:20115773..20115797 (25 bp)
GTTTTTCTGCTTCGGCTTCGTCATC
LOC_Os10g38170
OsAffx.20181.1.S1_x_at--1005--3753Chr04:13973928..13973947 (20 bp)
CTCTACCGCCCACATGACAAAAAGG
NONE
Target Sequence 
AGAGACGCCCTCCTCAGAGCTCAAGCCCCGCGAGACCATCTACTTTCCATCACCGACAACCCCACGGAGCCAAGAGCGGA
GGGCAAACGTCAAGGGGGAGGATGATGCCAGAGGGGACGACGACGTTGAGGACATCGCAAAGATGGCGACAGTGTGGCGC
GCGGCGAAGGGCGACCCCGCGACTAGGACACTCTTCATCCACGGCCTCGGTTGGAGCATCGAAGTCGATGACCTCCACTC
CGTGTTTTTCTGCTTCGGCTTCGTCATCTTCCGCTCCCACCGCTCCACGTTCCACGCCCTCTACCGCCCACATGACAAAA
AGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20181.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis