Browse Element(s) Details


Os.27275.2.S1_x_at

Description gb:NM_189026.1
DB_XREF= gi:34905135
GEN=P0700D12.12
TID=Os.27275.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.27275 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0700D12.12 (P0700D12.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0700D12.12 (P0700D12.12), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4057011/11Pyridoxamine 5'-phosphate oxidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g40530Os.10351.2.S1_at11/118+25519242..25526882Calcium-transporting ATPase 9, plasma membrane-type, putative, expressed
LOC_Os08g40530Os.10351.1.S1_a_at11/118+25519242..25526882Calcium-transporting ATPase 9, plasma membrane-type, putative, expressed
LOC_Os08g40540OsAffx.6095.1.S1_s_at11/118+25534174..25535530C2H2 zinc-finger protein, putative
LOC_Os08g40540OsAffx.6095.1.S1_at9/118+25534174..25535530C2H2 zinc-finger protein, putative
LOC_Os08g40540Os.15831.4.S1_x_at1/118+25534174..25535530C2H2 zinc-finger protein, putative
LOC_Os08g40550Os.45957.4.S1_x_at11/118+25535896..25540697retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g40560Os.15831.4.S1_x_at11/118+25543843..25549501C2H2 zinc-finger protein, putative, expressed
LOC_Os08g40560Os.15831.3.S1_x_at11/118+25543843..25549501C2H2 zinc-finger protein, putative, expressed
LOC_Os08g40560Os.15831.3.S1_at11/118+25543843..25549501C2H2 zinc-finger protein, putative, expressed
LOC_Os08g40560OsAffx.6874.1.S1_at1/118+25543843..25549501C2H2 zinc-finger protein, putative, expressed
LOC_Os08g40570Os.27275.1.S1_at11/118+25550586..25553679Pyridoxamine 5'-phosphate oxidase family protein, expressed
LOC_Os08g40570Os.27275.2.S1_x_at11/118+25550586..25553679Pyridoxamine 5'-phosphate oxidase family protein, expressed
LOC_Os08g40580Os.6650.1.S1_at11/118+25554795..25557771spermine/spermidine synthase, putative, expressed
LOC_Os08g40590Os.6381.1.S1_at11/118+25562331..25566742Oxysterol-binding protein, expressed
LOC_Os08g40590OsAffx.471.1.S1_at11/118+25562331..25566742Oxysterol-binding protein, expressed
LOC_Os08g40600OsAffx.21993.1.S1_at11/118+25567304..25568780Thaumatin family protein
LOC_Os08g40600OsAffx.21993.2.S1_x_at3/118+25567304..25568780Thaumatin family protein
LOC_Os08g40610Os.6512.1.S1_at11/118+25569799..25571502ribosomal protein S16 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27275.2.S1_x_at--1004--791Chr08:25552371..25552484 (25 bp)
ATGGGCCATCCAATATTTTCACTAT
LOC_Os08g40570
Os.27275.2.S1_x_at--379--951Chr08:25552326..25552350 (25 bp)
AGGAACTTGCTCTCTGACCCAAGAT
LOC_Os08g40570
Os.27275.2.S1_x_at--828--6311Chr08:25552306..25552328 (23 bp)
GATGCACACTTGTTGTCCAGGTACC
LOC_Os08g40570
Os.27275.2.S1_x_at--1061--8111Chr08:25552188..25552212 (25 bp)
GGACTGTCAAATGCACGTGTCACAA
LOC_Os08g40570
Os.27275.2.S1_x_at--842--7751Chr08:25552158..25552182 (25 bp)
GGTGATGTATATCCTTTGCCAGAAG
LOC_Os08g40570
Os.27275.2.S1_x_at--754--9591Chr08:25551498..25551522 (25 bp)
TCATTGGAGGCTTTGGCACTGTTGC
LOC_Os08g40570
Os.27275.2.S1_x_at--672--8991Chr08:25551452..25551476 (25 bp)
TGAAGCTATTCAACCCGACAAGATA
LOC_Os08g40570
Os.27275.2.S1_x_at--922--5251Chr08:25551221..25551245 (25 bp)
GAATGCAATTTTCTCGAAGCCACTT
LOC_Os08g40570
Os.27275.2.S1_x_at--793--7651Chr08:25551174..25551198 (25 bp)
GGGAGGTTGATGATGCTGCACTTAT
LOC_Os08g40570
Os.27275.2.S1_x_at--647--4411Chr08:25551013..25551138 (25 bp)
GCCAGGGTGCACAGTTCAACATTCA
LOC_Os08g40570
Os.27275.2.S1_x_at--263--8351Chr08:25550986..25551010 (25 bp)
GGCTGGCATTTGATGTACCTCACAA
LOC_Os08g40570
Target Sequence 
ATGGGCCATCCAATATTTTCACTATCACCGTTAGCAATACACACAAGGAACTTGCTCTCTGACCCAAGATGCACACTTGT
TGTCCAGGTACCTGGATGGAGTGGACTGTCAAATGCACGTGTCACAATATTTGGTGATGTATATCCTTTGCCAGAAGATC
AACAGGAGTGGGCACATAAGCAGTATGTTGCAAAACATCAACAATGGGCATCTCAACAGTGGGGAAATTTTTACTATTAC
AGGATGCAGAACATAAGCGACATATACTTCATTGGAGGCTTTGGCACTGTTGCATGGGTAGATGTCAAGGAGTATGAAGC
TATTCAACCCGACAAGATAGCAGTTGATGGTGGTGAACAAAGCTTAAAGGAGCTGAATGCAATTTTCTCGAAGCCACTTA
GAGAGTTCTTGTCATCAGAAGGGGAGGTTGATGATGCTGCACTTATATCAGTAGACAGCAAAGGGATAGATATAAGGGTT
CGCCAGGGTGCACAGTTCAACATTCAGAGGCTGGCATTTGATGTACCTCACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27275.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis