Browse Element(s) Details


Os.6650.1.S1_at

Description gb:AK105385.1
DB_XREF= gi:32990594
TID=Os.6650.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6650 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0700D12.13 (P0700D12.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-121-G10, full insert sequence.
FL= gb:AK073374.1 gb:AK105385.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4058011/11spermine/spermidine synthase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g40540OsAffx.6095.1.S1_s_at11/118+25534174..25535530C2H2 zinc-finger protein, putative
LOC_Os08g40540OsAffx.6095.1.S1_at9/118+25534174..25535530C2H2 zinc-finger protein, putative
LOC_Os08g40540Os.15831.4.S1_x_at1/118+25534174..25535530C2H2 zinc-finger protein, putative
LOC_Os08g40550Os.45957.4.S1_x_at11/118+25535896..25540697retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g40560Os.15831.4.S1_x_at11/118+25543843..25549501C2H2 zinc-finger protein, putative, expressed
LOC_Os08g40560Os.15831.3.S1_x_at11/118+25543843..25549501C2H2 zinc-finger protein, putative, expressed
LOC_Os08g40560Os.15831.3.S1_at11/118+25543843..25549501C2H2 zinc-finger protein, putative, expressed
LOC_Os08g40560OsAffx.6874.1.S1_at1/118+25543843..25549501C2H2 zinc-finger protein, putative, expressed
LOC_Os08g40570Os.27275.1.S1_at11/118+25550586..25553679Pyridoxamine 5'-phosphate oxidase family protein, expressed
LOC_Os08g40570Os.27275.2.S1_x_at11/118+25550586..25553679Pyridoxamine 5'-phosphate oxidase family protein, expressed
LOC_Os08g40580Os.6650.1.S1_at11/118+25554795..25557771spermine/spermidine synthase, putative, expressed
LOC_Os08g40590Os.6381.1.S1_at11/118+25562331..25566742Oxysterol-binding protein, expressed
LOC_Os08g40590OsAffx.471.1.S1_at11/118+25562331..25566742Oxysterol-binding protein, expressed
LOC_Os08g40600OsAffx.21993.1.S1_at11/118+25567304..25568780Thaumatin family protein
LOC_Os08g40600OsAffx.21993.2.S1_x_at3/118+25567304..25568780Thaumatin family protein
LOC_Os08g40610Os.6512.1.S1_at11/118+25569799..25571502ribosomal protein S16 containing protein, expressed
LOC_Os08g40620Os.8803.1.S1_at11/118+25579971..25584766RabGAP/TBC domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6650.1.S1_at--6--111Chr08:25555544..25555654 (25 bp)
ATTCTGATCACTTATGGCGACCCAA
LOC_Os08g40580
Os.6650.1.S1_at--1123--3211Chr08:25555522..25555546 (25 bp)
CAAGTTATCGATTGCGTCTCCTTAA
LOC_Os08g40580
Os.6650.1.S1_at--1105--2331Chr08:25555499..25555523 (25 bp)
AAAGACCTGCAGCTTTGGACAGTAA
LOC_Os08g40580
Os.6650.1.S1_at--837--1131Chr08:25555254..25555278 (25 bp)
AGTCGGGAGCCTTCATGGGAACTGA
LOC_Os08g40580
Os.6650.1.S1_at--607--5791Chr08:25555231..25555255 (25 bp)
GACGAAGCCACTGCCTTTAGATGGT
LOC_Os08g40580
Os.6650.1.S1_at--714--3171Chr08:25555196..25555220 (25 bp)
CAATTGTTAGTCTTCTTGGCCCAAA
LOC_Os08g40580
Os.6650.1.S1_at--587--10851Chr08:25555181..25555205 (25 bp)
TTGGCCCAAAACCTGATGTTCACTA
LOC_Os08g40580
Os.6650.1.S1_at--710--10071Chr08:25554995..25555019 (25 bp)
TAGTGATTTCACCTCATAACCCTTT
LOC_Os08g40580
Os.6650.1.S1_at--576--351Chr08:25554980..25555004 (25 bp)
ATAACCCTTTTGGATCATCTTGTAT
LOC_Os08g40580
Os.6650.1.S1_at--815--8771Chr08:25554844..25554868 (25 bp)
TGTTTCATGTGCTCCCTAGTAGAAA
LOC_Os08g40580
Os.6650.1.S1_at--685--10231Chr08:25554811..25554835 (25 bp)
TATTGAGTCCATACAGCTGATCCCA
LOC_Os08g40580
Target Sequence 
ATTCTGATCACTTATGGCGACCCAAGTTATCGATTGCGTCTCCTTAAAGACCTGCAGCTTTGGACAGTAAAGCTTCATGT
CATAGATAGATGGGAAAGGAGTCGGGAGCCTTCATGGGAACTGACGAAGCCACTGCCTTTAGATGGTGATAGCACATCAA
TTGTTAGTCTTCTTGGCCCAAAACCTGATGTTCACTATATTTATGTCTGTATAAAGGGCAGCGACGACGGGAAGTCGCAT
TTGGATTCGAGGGCTGAAGTCAATGGAGAAGCATAGTGATTTCACCTCATAACCCTTTTGGATCATCTTGTATAACCAGT
GTAGGAATAATGTAGTGCAGATACTGTATAATTATGCTGTTGCTTGATGAATCACTTGGTTTTATTGGCAGTAGTTAATT
TGATTTTTCACATATGCCTTATCATGTTTCATGTGCTCCCTAGTAGAAAATGCGACATATTGAGTCCATACAGCTGATCC
CA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6650.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis