Browse Element(s) Details


Os.8803.1.S1_at

Description gb:AK066731.1
DB_XREF= gi:32976749
TID=Os.8803.1
CNT=43
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.8803 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative microtubule-associated protein (P0700D12.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013074L23, full insert sequence.
FL= gb:AK066492.1 gb:AK066731.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4062011/11RabGAP/TBC domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g40580Os.6650.1.S1_at11/118+25554795..25557771spermine/spermidine synthase, putative, expressed
LOC_Os08g40590Os.6381.1.S1_at11/118+25562331..25566742Oxysterol-binding protein, expressed
LOC_Os08g40590OsAffx.471.1.S1_at11/118+25562331..25566742Oxysterol-binding protein, expressed
LOC_Os08g40600OsAffx.21993.1.S1_at11/118+25567304..25568780Thaumatin family protein
LOC_Os08g40600OsAffx.21993.2.S1_x_at3/118+25567304..25568780Thaumatin family protein
LOC_Os08g40610Os.6512.1.S1_at11/118+25569799..25571502ribosomal protein S16 containing protein, expressed
LOC_Os08g40620Os.8803.1.S1_at11/118+25579971..25584766RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os08g40630Os.23927.1.S1_at11/118+25586637..25589064mTERF family protein, expressed
LOC_Os08g40640OsAffx.21990.1.S1_at11/118+25590275..25600603retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g40640OsAffx.21991.1.S1_x_at11/118+25590275..25600603retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g40640OsAffx.21991.1.S1_at11/118+25590275..25600603retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g40640OsAffx.21992.1.S1_at11/118+25590275..25600603retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g40640Os.46785.2.S1_x_at5/118+25590275..25600603retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g40640OsAffx.442.1.S1_x_at2/118+25590275..25600603retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g40640OsAffx.442.1.S1_at1/118+25590275..25600603retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g40640OsAffx.30226.2.S1_x_at1/118+25590275..25600603retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g40650OsAffx.17440.1.S1_at11/118+25602723..25610337Protein kinase domain containing protein
LOC_Os08g40650Os.45902.1.A1_x_at2/118+25602723..25610337Protein kinase domain containing protein
LOC_Os08g40650OsAffx.22442.1.S1_x_at1/118+25602723..25610337Protein kinase domain containing protein
LOC_Os08g40650OsAffx.727.1.S1_x_at1/118+25602723..25610337Protein kinase domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8803.1.S1_at--901--551Chr08:25583984..25584008 (25 bp)
ATCCTGTTCTCCTTCTGATGGGAAT
LOC_Os08g40620
Os.8803.1.S1_at--610--5191Chr08:25584005..25584029 (25 bp)
GAATTCAAATAACTCCCGTGGTAGC
LOC_Os08g40620
Os.8803.1.S1_at--849--571Chr08:25584178..25584198 (21 bp)
ATCCAGGTGATTGAGTCGGCATTTC
LOC_Os08g40620
Os.8803.1.S1_at--358--8291Chr08:25584191..25584215 (25 bp)
GGCATTTCAGCAAGACCGTGGTCAG
LOC_Os08g40620
Os.8803.1.S1_at--1019--5651Chr08:25584262..25584286 (25 bp)
GACAGGTCACTGCAATGGCTGCTCT
LOC_Os08g40620
Os.8803.1.S1_at--451--4811Chr08:25584282..25584306 (25 bp)
GCTCTGACGGAGCTTCGCAAGATCA
LOC_Os08g40620
Os.8803.1.S1_at--411--7451Chr08:25584332..25584356 (25 bp)
GTGTAAGATGTATCGCCCATTCTTT
LOC_Os08g40620
Os.8803.1.S1_at--932--7831Chr08:25584399..25584423 (25 bp)
GGTACCTAGGTCTTTTTCATTCAGC
LOC_Os08g40620
Os.8803.1.S1_at--1006--4931Chr08:25584495..25584519 (25 bp)
GCATTGTACAAGGATCACCCGTGGA
LOC_Os08g40620
Os.8803.1.S1_at--940--1791Chr08:25584511..25584535 (25 bp)
ACCCGTGGATTTACCTGGCGCGTGA
LOC_Os08g40620
Os.8803.1.S1_at--148--6091Chr08:25584541..25584565 (25 bp)
GAGTAGTTCTCTCCGGCATTAGGAA
LOC_Os08g40620
Target Sequence 
ATCCTGTTCTCCTTCTGATGGGAATTCAAATAACTCCCGTGGTAGCGTAAAGTTGGCTTCTGGTGATAAAAAGGTCATGG
GCAGCCTAAAGAATCTTGGACAAAACATGCTTGAAAATATCCAGGTGATTGAGTCGGCATTTCAGCAAGACCGTGGTCAG
CCTGGCCCTGTGGAGAACTTCTCAAACAACATTCTTGGAGGCAAAGGACAGGTCACTGCAATGGCTGCTCTGACGGAGCT
TCGCAAGATCAGCAATCTGCTGAGCGAGATGTAACAGTGTAAGATGTATCGCCCATTCTTTCCCAGCTTTCTAGCTCAGC
TAAGGCCTGGTAGTAATAAGTCAGGTACCTAGGTCTTTTTCATTCAGCAGTGCTTGGCACTGCTTGAATATGTATATATA
GATTCGATTCGATTCCATTCCATTGAGTAAATCATGTAAGCATTGTACAAGGATCACCCGTGGATTTACCTGGCGCGTGA
TGAGGGAGTAGTTCTCTCCGGCATTAGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8803.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis