Browse Element(s) Details


Os.6512.1.S1_at

Description gb:AK064304.1
DB_XREF= gi:32974322
TID=Os.6512.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.6512 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative 30S ribosomal protein S16 (P0700D12.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-107-B06, full insert sequence.
FL= gb:AK064304.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4061011/11ribosomal protein S16 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g40560Os.15831.4.S1_x_at11/118+25543843..25549501C2H2 zinc-finger protein, putative, expressed
LOC_Os08g40560Os.15831.3.S1_x_at11/118+25543843..25549501C2H2 zinc-finger protein, putative, expressed
LOC_Os08g40560Os.15831.3.S1_at11/118+25543843..25549501C2H2 zinc-finger protein, putative, expressed
LOC_Os08g40560OsAffx.6874.1.S1_at1/118+25543843..25549501C2H2 zinc-finger protein, putative, expressed
LOC_Os08g40570Os.27275.1.S1_at11/118+25550586..25553679Pyridoxamine 5'-phosphate oxidase family protein, expressed
LOC_Os08g40570Os.27275.2.S1_x_at11/118+25550586..25553679Pyridoxamine 5'-phosphate oxidase family protein, expressed
LOC_Os08g40580Os.6650.1.S1_at11/118+25554795..25557771spermine/spermidine synthase, putative, expressed
LOC_Os08g40590Os.6381.1.S1_at11/118+25562331..25566742Oxysterol-binding protein, expressed
LOC_Os08g40590OsAffx.471.1.S1_at11/118+25562331..25566742Oxysterol-binding protein, expressed
LOC_Os08g40600OsAffx.21993.1.S1_at11/118+25567304..25568780Thaumatin family protein
LOC_Os08g40600OsAffx.21993.2.S1_x_at3/118+25567304..25568780Thaumatin family protein
LOC_Os08g40610Os.6512.1.S1_at11/118+25569799..25571502ribosomal protein S16 containing protein, expressed
LOC_Os08g40620Os.8803.1.S1_at11/118+25579971..25584766RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os08g40630Os.23927.1.S1_at11/118+25586637..25589064mTERF family protein, expressed
LOC_Os08g40640OsAffx.21990.1.S1_at11/118+25590275..25600603retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g40640OsAffx.21991.1.S1_x_at11/118+25590275..25600603retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g40640OsAffx.21991.1.S1_at11/118+25590275..25600603retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g40640OsAffx.21992.1.S1_at11/118+25590275..25600603retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g40640Os.46785.2.S1_x_at5/118+25590275..25600603retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g40640OsAffx.442.1.S1_x_at2/118+25590275..25600603retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g40640OsAffx.442.1.S1_at1/118+25590275..25600603retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g40640OsAffx.30226.2.S1_x_at1/118+25590275..25600603retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0007046biological_processribosome biogenesis
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6512.1.S1_at--204--411Chr08:25570222..25570246 (25 bp)
ATCAGTTGGAGCACAGCCATCGGAT
LOC_Os08g40610
Os.6512.1.S1_at--265--571Chr08:25570185..25570209 (25 bp)
ATCCTCTACCGTGCTGGAATTCTAC
LOC_Os08g40610
Os.6512.1.S1_at--687--3011Chr08:25570150..25570174 (25 bp)
AATGCTAGCTATGGCCCACAAGGGT
LOC_Os08g40610
Os.6512.1.S1_at--1025--4591Chr08:25570118..25570142 (25 bp)
GCGACAGACGTCCTATTGATCCCAT
LOC_Os08g40610
Os.6512.1.S1_at--604--6291Chr08:25570053..25570077 (25 bp)
GATGATTCTCATACTCCCAAGAGTG
LOC_Os08g40610
Os.6512.1.S1_at--680--2831Chr08:25569941..25569965 (25 bp)
AAGTACTGTTTGTGGCCTTTCTGAT
LOC_Os08g40610
Os.6512.1.S1_at--369--3871Chr08:25569921..25569945 (25 bp)
CTGATGGGTGTTTGAGCCTGTGACT
LOC_Os08g40610
Os.6512.1.S1_at--509--1191Chr08:25569896..25569920 (25 bp)
AGTATGTTGTGACCTTTCTTGCTGA
LOC_Os08g40610
Os.6512.1.S1_at--868--10711Chr08:25569878..25569902 (25 bp)
TTGCTGACCGGCTTTATTGATCTAT
LOC_Os08g40610
Os.6512.1.S1_at--702--51Chr08:25569863..25569887 (25 bp)
ATTGATCTATGCTCCTGTCATCTAT
LOC_Os08g40610
Os.6512.1.S1_at--1101--8711Chr08:25569848..25569872 (25 bp)
TGTCATCTATTCTCAGGAACACGAA
LOC_Os08g40610
Target Sequence 
ATCAGTTGGAGCACAGCCATCGGATCCTGTGGAGCGCATCCTCTACCGTGCTGGAATTCTACCTCCACCTCCAATGCTAG
CTATGGCCCACAAGGGTGGGCCTCGCGACAGACGTCCTATTGATCCCATGACTGGGCGCCCCTTAGACCTTGAGGGTGTC
ACAGTTGTTGATGATTCTCATACTCCCAAGAGTGGTGNTGGAGCACCTAACGAGGAGACAGCATAGATGAGGCATGATGA
TATATCTGTTTTAGCATATTGTGTGGTTTTGCAAGATTAAAAAGTACTGTTTGTGGCCTTTCTGATGGGTGTTTGAGCCT
GTGACTAGTATGTTGTGACCTTTCTTGCTGACCGGCTTTATTGATCTATGCTCCTGTCATCTATTCTCAGGAACACGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6512.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis