Browse Element(s) Details


Os.15831.3.S1_at

Description gb:AK120996.1
DB_XREF= gi:37990619
TID=Os.15831.3
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.15831 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative C2H2 zinc-finger protein (P0686C03.50), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023044G03, full insert sequence.
FL= gb:AK120996.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4056011/11C2H2 zinc-finger protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g40530Os.10351.2.S1_at11/118+25519242..25526882Calcium-transporting ATPase 9, plasma membrane-type, putative, expressed
LOC_Os08g40530Os.10351.1.S1_a_at11/118+25519242..25526882Calcium-transporting ATPase 9, plasma membrane-type, putative, expressed
LOC_Os08g40540OsAffx.6095.1.S1_s_at11/118+25534174..25535530C2H2 zinc-finger protein, putative
LOC_Os08g40540OsAffx.6095.1.S1_at9/118+25534174..25535530C2H2 zinc-finger protein, putative
LOC_Os08g40540Os.15831.4.S1_x_at1/118+25534174..25535530C2H2 zinc-finger protein, putative
LOC_Os08g40550Os.45957.4.S1_x_at11/118+25535896..25540697retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g40560Os.15831.4.S1_x_at11/118+25543843..25549501C2H2 zinc-finger protein, putative, expressed
LOC_Os08g40560Os.15831.3.S1_x_at11/118+25543843..25549501C2H2 zinc-finger protein, putative, expressed
LOC_Os08g40560Os.15831.3.S1_at11/118+25543843..25549501C2H2 zinc-finger protein, putative, expressed
LOC_Os08g40560OsAffx.6874.1.S1_at1/118+25543843..25549501C2H2 zinc-finger protein, putative, expressed
LOC_Os08g40570Os.27275.1.S1_at11/118+25550586..25553679Pyridoxamine 5'-phosphate oxidase family protein, expressed
LOC_Os08g40570Os.27275.2.S1_x_at11/118+25550586..25553679Pyridoxamine 5'-phosphate oxidase family protein, expressed
LOC_Os08g40580Os.6650.1.S1_at11/118+25554795..25557771spermine/spermidine synthase, putative, expressed
LOC_Os08g40590Os.6381.1.S1_at11/118+25562331..25566742Oxysterol-binding protein, expressed
LOC_Os08g40590OsAffx.471.1.S1_at11/118+25562331..25566742Oxysterol-binding protein, expressed
LOC_Os08g40600OsAffx.21993.1.S1_at11/118+25567304..25568780Thaumatin family protein
LOC_Os08g40600OsAffx.21993.2.S1_x_at3/118+25567304..25568780Thaumatin family protein
LOC_Os08g40610Os.6512.1.S1_at11/118+25569799..25571502ribosomal protein S16 containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016568biological_processchromatin modification
GO:0045449biological_processregulation of transcription
GO:0048367biological_processshoot development
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15831.3.S1_at--215--3831Chr08:25544182..25544206 (25 bp)
CTGCCATATCATCAGGTATTCGTAC
LOC_Os08g40560
Os.15831.3.S1_at--802--9191Chr08:25544181..25544205 (25 bp)
TGCCATATCATCAGGTATTCGTACC
LOC_Os08g40560
Os.15831.3.S1_at--364--3571Chr08:25544178..25544202 (25 bp)
CATATCATCAGGTATTCGTACCGTA
LOC_Os08g40560
Os.15831.3.S1_at--575--10151Chr08:25544176..25544200 (25 bp)
TATCATCAGGTATTCGTACCGTATT
LOC_Os08g40560
Os.15831.3.S1_at--14--3551Chr08:25544173..25544197 (25 bp)
CATCAGGTATTCGTACCGTATTTGT
LOC_Os08g40560
Os.15831.3.S1_at--437--9631Chr08:25544171..25544195 (25 bp)
TCAGGTATTCGTACCGTATTTGTAT
LOC_Os08g40560
Os.15831.3.S1_at--713--7851Chr08:25544168..25544192 (25 bp)
GGTATTCGTACCGTATTTGTATATT
LOC_Os08g40560
Os.15831.3.S1_at--890--10611Chr08:25544164..25544188 (25 bp)
TTCGTACCGTATTTGTATATTCAGC
LOC_Os08g40560
Os.15831.3.S1_at--611--1931Chr08:25544138..25544162 (25 bp)
ACTGGGTGTGAGTAGATTGGAACCT
LOC_Os08g40560
Os.15831.3.S1_at--567--7471Chr08:25544133..25544157 (25 bp)
GTGTGAGTAGATTGGAACCTGATAC
LOC_Os08g40560
Os.15831.3.S1_at--1161--1171Chr08:25544128..25544152 (25 bp)
AGTAGATTGGAACCTGATACATCGG
LOC_Os08g40560
Target Sequence 
CTGCCATATCATCAGGTATTCGTACCGTATTTGTATATTCAGCNACTGGGTGTGAGTAGATTGGAACCTGATACATCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15831.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis