Browse Element(s) Details


Os.7153.1.S1_at

Description gb:AK071079.1
DB_XREF= gi:32981102
TID=Os.7153.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.7153 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023076N12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023076N12, full insert sequence.
FL= gb:AK071079.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3488011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g34850Os.6265.1.S1_at11/1112+21176993..21181347Fibronectin type III domain containing protein, expressed
LOC_Os12g34860Os.27772.2.S1_at11/1112+21187343..21192527phenylalanyl-tRNA synthetase class IIc family protein, putative, expressed
LOC_Os12g34860Os.27772.1.S1_x_at9/1112+21187343..21192527phenylalanyl-tRNA synthetase class IIc family protein, putative, expressed
LOC_Os12g34870OsAffx.19970.1.S1_x_at11/1112+21192352..21195968Mitochondrial carrier protein, expressed
LOC_Os12g34870OsAffx.19970.1.S1_s_at11/1112+21192352..21195968Mitochondrial carrier protein, expressed
LOC_Os12g34870Os.53252.1.S1_at11/1112+21192352..21195968Mitochondrial carrier protein, expressed
LOC_Os12g34880Os.7153.1.S1_at11/1112+21204840..21206279expressed protein
LOC_Os12g34890Os.47726.1.S1_at10/1112+21206941..21209935Acyl carrier protein I, chloroplast precursor, putative, expressed
LOC_Os12g34900Os.9028.1.S1_at11/1112+21214158..21216770expressed protein
LOC_Os12g34900OsAffx.30341.1.S1_x_at3/1112+21214158..21216770expressed protein
LOC_Os12g34920Os.8254.1.S1_at11/1112+21220560..21223927expressed protein
LOC_Os12g34930OsAffx.19971.1.S1_at10/1112+21229911..21230609hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7153.1.S1_at--482--2411Chr12:21205295..21205319 (25 bp)
AAACACTGCACAAGTGGCTCGACGA
LOC_Os12g34880
Os.7153.1.S1_at--247--5871Chr12:21205257..21205281 (25 bp)
GAGCCAGCCAATGTGGACATCAGCA
LOC_Os12g34880
Os.7153.1.S1_at--682--3591Chr12:21205217..21205241 (25 bp)
CATTCTACGAGTCCCTGACGGCGAA
LOC_Os12g34880
Os.7153.1.S1_at--1119--3851Chr12:21205187..21205211 (25 bp)
CTGACCTGGGAGAGATCTTGCTGAA
LOC_Os12g34880
Os.7153.1.S1_at--486--2911Chr12:21205131..21205155 (25 bp)
AAGGAGAGCTTCCACGGCGCGTTCT
LOC_Os12g34880
Os.7153.1.S1_at--193--4391Chr12:21205101..21205125 (25 bp)
GCCAATGCCGCGGTGAGTTTGATAT
LOC_Os12g34880
Os.7153.1.S1_at--565--7671Chr12:21205021..21205045 (25 bp)
GGGTTTTGCTTTTGAACCATCCTAG
LOC_Os12g34880
Os.7153.1.S1_at--280--9251Chr12:21205002..21205026 (25 bp)
TCCTAGCAGGGAATTGGCATCTCAG
LOC_Os12g34880
Os.7153.1.S1_at--516--8491Chr12:21204988..21205012 (25 bp)
TGGCATCTCAGATCTTTGTCTACTG
LOC_Os12g34880
Os.7153.1.S1_at--472--6071Chr12:21204959..21204983 (25 bp)
GAGTTCATCAGGTTTCTTTGTGTGC
LOC_Os12g34880
Os.7153.1.S1_at--979--7011Chr12:21204872..21204896 (25 bp)
GTACTTGCAACAGTCACATGCGATT
LOC_Os12g34880
Target Sequence 
AAACACTGCACAAGTGGCTCGACGACGAGTACTGCCCGGAGCCAGCCAATGTGGACATCAGCAACACCGCTGCGCGGTCA
TTCTACGAGTCCCTGACGGCGAAAGAGTCTGACCTGGGAGAGATCTTGCTGAAGATGGTGGGAGATCTGCAGAAGCTGTC
ATACAAGGAGAGCTTCCACGGCGCGTTCTCGGCTGCCAATGCCGCGGTGAGTTTGATATCGCAGAGGATGGAGTCATCAT
CTGATGACTGATCATTGCCAAGCAATTGCTAGATGGGTTTTGCTTTTGAACCATCCTAGCAGGGAATTGGCATCTCAGAT
CTTTGTCTACTGAATTGAGTTCATCAGGTTTCTTTGTGTGCCTGGGCGGGCGCTTGGTTGAGAAAATTGAAAGATGATGT
GATCATGTAATTGTAACTTGTAAGTACTTGCAACAGTCACATGCGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7153.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis