Browse Element(s) Details


OsAffx.19970.1.S1_x_at

Description tigr:9640.m03369
TID=OsAffx.19970.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Shikimate quinate 5-dehydrogenase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3487011/11Mitochondrial carrier protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g34820OsAffx.32026.1.S1_at11/1112+21167251..21167925hypothetical protein
LOC_Os12g34830NANA12+21170282..21170485hypothetical protein
LOC_Os12g34840Os.40429.1.S1_at11/1112+21173481..21176822rac GTPase activating protein 3, putative, expressed
LOC_Os12g34840Os.25281.1.A1_s_at11/1112+21173481..21176822rac GTPase activating protein 3, putative, expressed
LOC_Os12g34840Os.25281.1.A1_at3/1112+21173481..21176822rac GTPase activating protein 3, putative, expressed
LOC_Os12g34850Os.6265.1.S1_at11/1112+21176993..21181347Fibronectin type III domain containing protein, expressed
LOC_Os12g34860Os.27772.2.S1_at11/1112+21187343..21192527phenylalanyl-tRNA synthetase class IIc family protein, putative, expressed
LOC_Os12g34860Os.27772.1.S1_x_at9/1112+21187343..21192527phenylalanyl-tRNA synthetase class IIc family protein, putative, expressed
LOC_Os12g34870OsAffx.19970.1.S1_x_at11/1112+21192352..21195968Mitochondrial carrier protein, expressed
LOC_Os12g34870OsAffx.19970.1.S1_s_at11/1112+21192352..21195968Mitochondrial carrier protein, expressed
LOC_Os12g34870Os.53252.1.S1_at11/1112+21192352..21195968Mitochondrial carrier protein, expressed
LOC_Os12g34880Os.7153.1.S1_at11/1112+21204840..21206279expressed protein
LOC_Os12g34890Os.47726.1.S1_at10/1112+21206941..21209935Acyl carrier protein I, chloroplast precursor, putative, expressed
LOC_Os12g34900Os.9028.1.S1_at11/1112+21214158..21216770expressed protein
LOC_Os12g34900OsAffx.30341.1.S1_x_at3/1112+21214158..21216770expressed protein
LOC_Os12g34920Os.8254.1.S1_at11/1112+21220560..21223927expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0005739cellular_componentmitochondrion
GO:0005743cellular_componentmitochondrial inner membrane
GO:0005488molecular_functionbinding
GO:0005509molecular_functioncalcium ion binding
GO:0017077molecular_functionoxidative phosphorylation uncoupler activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19970.1.S1_x_at--865--2871Chr12:21194372..21194396 (25 bp)
AAGTGGAAGGGCCTCGATCACTCTA
LOC_Os12g34870
OsAffx.19970.1.S1_x_at--673--9391Chr12:21194359..21194383 (25 bp)
TCGATCACTCTACCTGGGACTGGCA
LOC_Os12g34870
OsAffx.19970.1.S1_x_at--797--5731Chr12:21194342..21194366 (25 bp)
GACTGGCACCAGCATTGACTAGATC
LOC_Os12g34870
OsAffx.19970.1.S1_x_at--586--9511Chr12:21194312..21194336 (25 bp)
TCTACGGTGGCCTTCGATTAGGGTT
LOC_Os12g34870
OsAffx.19970.1.S1_x_at--306--271Chr12:21194287..21194311 (25 bp)
ATATGAGCCCTGCAAATATGTCTGC
LOC_Os12g34870
OsAffx.19970.1.S1_x_at--894--10631Chr12:21194238..21194262 (25 bp)
TTCGCTTTTAAGTTTGCATCTGGAG
LOC_Os12g34870
OsAffx.19970.1.S1_x_at--193--491Chr12:21194221..21194245 (25 bp)
ATCTGGAGTAATTGCGGGCGCCCTA
LOC_Os12g34870
OsAffx.19970.1.S1_x_at--903--4551Chr12:21194204..21194228 (25 bp)
GCGCCCTAGCAACTGCGTTGACAAA
LOC_Os12g34870
OsAffx.19970.1.S1_x_at--800--8891Chr12:21194063..21194087 (25 bp)
TGAGTCCAAGCAGAACCAGTACAAT
LOC_Os12g34870
OsAffx.19970.1.S1_x_at--376--711Chr12:21193638..21193949 (25 bp)
ATGAGGCTAAGCAGCGTGAGTGCAA
LOC_Os12g34870
OsAffx.19970.1.S1_x_at--1108--5632Chr12:21192722..21192746 (25 bp)
GACAGCAATCACCTTCGTTGTGTGT
LOC_Os12g34870
Target Sequence 
AAGTGGAAGGGCCTCGATCACTCTACCTGGGACTGGCACCAGCATTGACTAGATCTGTCATCTACGGTGGCCTTCGATTA
GGGTTATATGAGCCCTGCAAATATGTCTGCAATTATGCATTTGGATCAACAAACTTCGCTTTTAAGTTTGCATCTGGAGT
AATTGCGGGCGCCCTAGCAACTGCGTTGACAAATCCAACAGAGGTTTTGAAGGTGAGATCGCAAATGAGTCCAAGCAGAA
CCAGTACAATCGGGGTGCTTAAGAAAATTGTAGCAGAGGAAGGGGTCAAAGCACTTTGGAAAGGAGTTGGCCCAGCAATG
GCAAGGGCGGGCTGCCTCACGGCATCACAGATGGCTACTTATGATGAGGCTAAGCAGCGTGAGTGCAAAGGTGCCAGAGT
ATACAGGAATGGCTTCCATTGTGGTTATCAGGTTGTGGTGACAGAGGGTGTAACGTCGCTTTATAAAGGTGGGTTTGCCA
CCTTTGCAAGATTAGGTCCTCAGACAGCAATCACCTTCGTTGTGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19970.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis