Browse Element(s) Details


Os.27772.1.S1_x_at

Description gb:AK058977.1
DB_XREF= gi:32968995
TID=Os.27772.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27772 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013028J05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-020-D07, full insert sequence.
FL= gb:AK058977.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g348609/11phenylalanyl-tRNA synthetase class IIc family protein, putative, expressed
LOC_Os06g203201/11trigger factor family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g34820OsAffx.32026.1.S1_at11/1112+21167251..21167925hypothetical protein
LOC_Os12g34830NANA12+21170282..21170485hypothetical protein
LOC_Os12g34840Os.40429.1.S1_at11/1112+21173481..21176822rac GTPase activating protein 3, putative, expressed
LOC_Os12g34840Os.25281.1.A1_s_at11/1112+21173481..21176822rac GTPase activating protein 3, putative, expressed
LOC_Os12g34840Os.25281.1.A1_at3/1112+21173481..21176822rac GTPase activating protein 3, putative, expressed
LOC_Os12g34850Os.6265.1.S1_at11/1112+21176993..21181347Fibronectin type III domain containing protein, expressed
LOC_Os12g34860Os.27772.2.S1_at11/1112+21187343..21192527phenylalanyl-tRNA synthetase class IIc family protein, putative, expressed
LOC_Os12g34860Os.27772.1.S1_x_at9/1112+21187343..21192527phenylalanyl-tRNA synthetase class IIc family protein, putative, expressed
LOC_Os12g34870OsAffx.19970.1.S1_x_at11/1112+21192352..21195968Mitochondrial carrier protein, expressed
LOC_Os12g34870OsAffx.19970.1.S1_s_at11/1112+21192352..21195968Mitochondrial carrier protein, expressed
LOC_Os12g34870Os.53252.1.S1_at11/1112+21192352..21195968Mitochondrial carrier protein, expressed
LOC_Os12g34880Os.7153.1.S1_at11/1112+21204840..21206279expressed protein
LOC_Os12g34890Os.47726.1.S1_at10/1112+21206941..21209935Acyl carrier protein I, chloroplast precursor, putative, expressed
LOC_Os12g34900Os.9028.1.S1_at11/1112+21214158..21216770expressed protein
LOC_Os12g34900OsAffx.30341.1.S1_x_at3/1112+21214158..21216770expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006432biological_processphenylalanyl-tRNA aminoacylation
GO:0006457biological_processprotein folding
GO:0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
GO:0004826molecular_functionphenylalanine-tRNA ligase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27772.1.S1_x_at--237--9611Chr12:21188587..21188611 (25 bp)
TCATACCAGCGCTCATCAAGCAGAG
LOC_Os12g34860
Os.27772.1.S1_x_at--250--8011Chr12:21188620..21188644 (25 bp)
GGATGGACACACACATTTCCTTGTA
LOC_Os12g34860
Os.27772.1.S1_x_at--423--10791Chr12:21188673..21188697 (25 bp)
TTGATTCAACTCACTATCCTTGCTT
LOC_Os12g34860
Os.27772.1.S1_x_at--723--2031Chr12:21188685..21188781 (25 bp)
ACTATCCTTGCTTCCATCAGATGGA
LOC_Os12g34860
Os.27772.1.S1_x_at--767--1311Chr12:21188775..21188799 (25 bp)
AGATGGAGGGCTTCCGTGTCTTCAC
LOC_Os12g34860
Os.27772.1.S1_x_at--266--7451Chr12:21188790..21188814 (25 bp)
GTGTCTTCACTCCAGATGAATGGTC
LOC_Os12g34860
Os.27772.1.S1_x_at--121--2431Chr12:21188881..21188997 (25 bp)
AAAACATCTCTTTGGTGCTGTGGAA
LOC_Os12g34860
Os.27772.1.S1_x_at--87--10751Chr12:21189008..21189032 (25 bp)
TTGACACATACTTCCCATTCACTAA
LOC_Os12g34860
Os.27772.1.S1_x_at--406--9791Chr12:21189030..21189054 (25 bp)
TAACCCGTCCTTTGAACTCGAGATA
LOC_Os12g34860
Os.27772.1.S1_x_at--126--2391NONE
AAACTGAAGCCTTGTGCCAACTCAT
NONE
Os.27772.1.S1_x_at--931--4371Chr06:11680892..11680916 (25 bp)
CCAACTCATTGCCTACCGATGGAAT
LOC_Os06g20320
Target Sequence 
TCATACCAGCGCTCATCAAGCAGAGCTGCTAAGGGATGGACACACACATTTCCTTGTAACTGGGGATGTTTATCGTAGGG
ATTCTATTGATTCAACTCACTATCCTTGCTTCCATCAGATGGAGGGCTTCCGTGTCTTCACTCCAGATGAATGGTCAGAT
TCTGGCATGGATGGGACAGCATATGCAGCTGCAGACCTCAAGAAAACACTGGAAGGCTTGGCAAAACATCTCTTTGGTGC
TGTGGAAATGCGATGGGTTGACACATACTTCCCATTCACTAACCCGTCCTTTGAACTCGAGATATATTTTCAGGATGATT
GGTTGGAAGTTCTGGGATGTGGAGTCACTGAGCAGGAAATTTTGAAAAACTGAAGCCTTGTGCCAACTCATTGCCTACCG
ATGGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27772.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis