Browse Element(s) Details


Os.53252.1.S1_at

Description gb:AK071593.1
DB_XREF= gi:32981616
TID=Os.53252.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53252 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023103G12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023103G12, full insert sequence.
FL= gb:AK071593.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3487011/11Mitochondrial carrier protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g34820OsAffx.32026.1.S1_at11/1112+21167251..21167925hypothetical protein
LOC_Os12g34830NANA12+21170282..21170485hypothetical protein
LOC_Os12g34840Os.40429.1.S1_at11/1112+21173481..21176822rac GTPase activating protein 3, putative, expressed
LOC_Os12g34840Os.25281.1.A1_s_at11/1112+21173481..21176822rac GTPase activating protein 3, putative, expressed
LOC_Os12g34840Os.25281.1.A1_at3/1112+21173481..21176822rac GTPase activating protein 3, putative, expressed
LOC_Os12g34850Os.6265.1.S1_at11/1112+21176993..21181347Fibronectin type III domain containing protein, expressed
LOC_Os12g34860Os.27772.2.S1_at11/1112+21187343..21192527phenylalanyl-tRNA synthetase class IIc family protein, putative, expressed
LOC_Os12g34860Os.27772.1.S1_x_at9/1112+21187343..21192527phenylalanyl-tRNA synthetase class IIc family protein, putative, expressed
LOC_Os12g34870OsAffx.19970.1.S1_x_at11/1112+21192352..21195968Mitochondrial carrier protein, expressed
LOC_Os12g34870OsAffx.19970.1.S1_s_at11/1112+21192352..21195968Mitochondrial carrier protein, expressed
LOC_Os12g34870Os.53252.1.S1_at11/1112+21192352..21195968Mitochondrial carrier protein, expressed
LOC_Os12g34880Os.7153.1.S1_at11/1112+21204840..21206279expressed protein
LOC_Os12g34890Os.47726.1.S1_at10/1112+21206941..21209935Acyl carrier protein I, chloroplast precursor, putative, expressed
LOC_Os12g34900Os.9028.1.S1_at11/1112+21214158..21216770expressed protein
LOC_Os12g34900OsAffx.30341.1.S1_x_at3/1112+21214158..21216770expressed protein
LOC_Os12g34920Os.8254.1.S1_at11/1112+21220560..21223927expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0005739cellular_componentmitochondrion
GO:0005743cellular_componentmitochondrial inner membrane
GO:0005488molecular_functionbinding
GO:0005509molecular_functioncalcium ion binding
GO:0017077molecular_functionoxidative phosphorylation uncoupler activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53252.1.S1_at--421--4671Chr12:21193690..21193714 (25 bp)
GCGGGAACAGCTAGTACTCTTGTGA
LOC_Os12g34870
Os.53252.1.S1_at--222--7011Chr12:21193677..21193701 (25 bp)
GTACTCTTGTGACTGCACCTATAGA
LOC_Os12g34870
Os.53252.1.S1_at--1038--5711Chr12:21192671..21192695 (25 bp)
GACTGCTATTTAGTGCTAGTACTCC
LOC_Os12g34870
Os.53252.1.S1_at--967--6991Chr12:21192653..21192677 (25 bp)
GTACTCCATGACTAGGAAGATGCAG
LOC_Os12g34870
Os.53252.1.S1_at--661--5351Chr12:21192638..21192662 (25 bp)
GAAGATGCAGACCAATAGATGTTTA
LOC_Os12g34870
Os.53252.1.S1_at--19--6291Chr12:21192621..21192645 (25 bp)
GATGTTTAGTCGGAGGGCATTTTTT
LOC_Os12g34870
Os.53252.1.S1_at--1129--10491Chr12:21192585..21192609 (25 bp)
TTCAAGGCATTATTTTCCGCATTCA
LOC_Os12g34870
Os.53252.1.S1_at--472--7671Chr12:21192538..21192562 (25 bp)
GGGATTCCATCTGAACTTTTAACTC
LOC_Os12g34870
Os.53252.1.S1_at--224--5471Chr12:21192526..21192550 (25 bp)
GAACTTTTAACTCCTCTCAGAATTT
LOC_Os12g34870
Os.53252.1.S1_at--143--6831Chr12:21192459..21192483 (25 bp)
GTTTAGTTACACACTTTCTTGTCAA
LOC_Os12g34870
Os.53252.1.S1_at--617--5211Chr12:21192353..21192377 (25 bp)
GAATAAATCTTCCAAAACTCTTGTA
LOC_Os12g34870
Target Sequence 
GCGGGAACAGCTAGTACTCTTGTGACTGCACCTATAGACATGATCAAAACAAGGTTAATGTTGCAGCGTGAGTGCAAAGG
TGCCAGAGTATACAGGAATGGCTTCCATTGTGGTTATCAGGTTGTGGTGACAGAGGGTGTAACGTCGCTTTATAAAGGTG
GGTTTGCCACCTTTGCAAGATTAGGTCCTCAGACAGCAATCACCTTCGTTGTGTGTGAGAAGCTTCGTGAACTCGCAGGA
ATGACTGCTATTTAGTGCTAGTACTCCATGACTAGGAAGATGCAGACCAATAGATGTTTAGTCGGAGGGCATTTTTTTTC
CCCTTTAATTCAAGGCATTATTTTCCGCATTCATTATCAGAAAAATTCATCGATGGGGATTCCATCTGAACTTTTAACTC
CTCTCAGAATTTTTGTTCTTGCAATTCAATGATGTAATTCTATTTGTTACAAAAGTTTAGTTACACACTTTCTTGTCAAA
TAACAATTATTTGACAAACAAGGTATATGGAAGAAAGCAGACATGATAGTTTCAGTTAGTTTAATACATGAAATTGTTCT
GAATAAATCTTCCAAAACTCTTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53252.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis