Browse Element(s) Details


OsAffx.32028.1.S1_at

Description tigr:9640.m03384
TID=OsAffx.32028.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3501010/11Ribosome inactivating protein
LOC_Os12g349502/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g34970OsAffx.19972.1.S1_at3/1112+21249760..21252428hypothetical protein
LOC_Os12g34970Os.8254.1.S1_at1/1112+21249760..21252428hypothetical protein
LOC_Os12g34980OsAffx.19972.1.S1_at1/1112+21255744..21258866csAtPR5, putative, expressed
LOC_Os12g34990Os.14868.1.S1_at11/1112+21259491..21263446expressed protein
LOC_Os12g34990Os.35073.1.S1_x_at3/1112+21259491..21263446expressed protein
LOC_Os12g35000NANA12+21268967..21273930retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g35010OsAffx.32028.1.S1_at10/1112+21275202..21281512Ribosome inactivating protein
LOC_Os12g35010OsAffx.31279.1.S1_at1/1112+21275202..21281512Ribosome inactivating protein
LOC_Os12g35020OsAffx.19972.1.S1_at11/1112+21281744..21287450hypothetical protein
LOC_Os12g35030Os.20374.1.S1_at11/1112+21288793..21291064Plus-3 domain containing protein, expressed
LOC_Os12g35040Os.8836.1.S1_at11/1112+21291320..21294199Metalloenzyme superfamily protein, expressed
LOC_Os12g35050OsAffx.10645.1.S1_at3/1112+21295365..21295676hypothetical protein
LOC_Os12g35060Os.52168.1.S1_at11/1112+21296696..21303604expressed protein
LOC_Os12g35070NANA12+21304060..21304768hypothetical protein
LOC_Os12g35080NANA12+21305653..21306230hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32028.1.S1_at--507--2971Chr12:21276889..21276913 (25 bp)
AATGGTGCCGGTCAGTGGTTCAACT
LOC_Os12g35010
OsAffx.32028.1.S1_at--895--10371Chr12:21276840..21276864 (25 bp)
TTTTCAATGCCCAACCTATCTTGTA
LOC_Os12g35010
OsAffx.32028.1.S1_at--1118--811NONE
ATGGTCACCTTCTTCAGGACTGGGA
NONE
OsAffx.32028.1.S1_at--313--8452Chr12:21275617..21275641 (25 bp)
GGCCACCGTCTGTACTTGATTCATA
LOC_Os12g35010
OsAffx.32028.1.S1_at--453--5452Chr12:21275580..21275604 (25 bp)
GAACTTCAACAATGGTCTTCCGCGT
LOC_Os12g35010
OsAffx.32028.1.S1_at--463--5411Chr12:21275495..21275519 (25 bp)
GAAGCTGCACGCCTGAGATCAGTCA
LOC_Os12g35010
OsAffx.32028.1.S1_at--829--8171Chr12:21275432..21275456 (25 bp)
GGAACGATCACAAGCCTCATTACAA
LOC_Os12g35010
OsAffx.32028.1.S1_at--79--4091Chr12:21275395..21275419 (25 bp)
CGAGCTGGGACCTGATTTCTGGATT
LOC_Os12g35010
OsAffx.32028.1.S1_at--442--7951Chr12:21275330..21275354 (25 bp)
GGATATCTTCAGACCGAGCTTGACA
LOC_Os12g35010
OsAffx.32028.1.S1_at--184--5911Chr12:21275315..21275339 (25 bp)
GAGCTTGACAAACTTCGCCGGATCG
LOC_Os12g35010
OsAffx.32028.1.S1_at--831--6671Chr12:21275247..21275271 (25 bp)
GTTGCTGCTCATCCTTTACAGACAA
LOC_Os12g35010
Target Sequence 
AATGGTGCCGGTCAGTGGTTCAACTTCTCTGACACACCAGCCCCTGACATTTTCAATGCCCAACCTATCTTGTACCTGAA
AGCAGACTATGGTCACCTTCTTCAGGACTGGGATGAGGTTACAGTGGGGCCACCGTCTGTACTTGATTCATACTACAGAC
TACTGAACTTCAACAATGGTCTTCCGCGTGACCACCCACTTCTTCATGTCCAAAGGAGAGCAATTGCACGCTTAGCAGTG
ATGTTTTGTGAAGCTGCACGCCTGAGATCAGTCAGAGCGCTCGTTTCTCACCAAATGGACCTATATATGAATGGAACGAT
CACAAGCCTCATTACAAGGAAGAGAATCACGAGCTGGGACCTGATTTCTGGATTTGCATTACATTGCTGGAGCCGGGAGC
AGGATGGCATCGGAGGATATCTTCAGACCGAGCTTGACAAACTTCGCCGGATCGGCATCTATGCTGCAAATCATGTTGCG
GGCGAACCAGATGGTGAGTTGCTGCTCATCCTTTACAGACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32028.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis