Browse Element(s) Details


OsAffx.20714.2.S1_at

Description tigr:9638.m00731
TID=OsAffx.20714.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0861011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g08560Os.27691.2.S1_x_at11/1110+4419535..4420535retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08560Os.27691.2.S1_at11/1110+4419535..4420535retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08570OsAffx.18174.1.S1_at10/1110+4421729..4427909RNA recognition motif family protein, expressed
LOC_Os10g08570Os.10084.3.S1_at1/1110+4421729..4427909RNA recognition motif family protein, expressed
LOC_Os10g08580Os.46278.1.S1_a_at11/1110+4429249..4433064Deoxyribodipyrimidine photo-lyase, putative, expressed
LOC_Os10g08590OsAffx.8457.1.S1_at11/1110+4434863..4436227hypothetical protein
LOC_Os10g08599NANA10+4437906..4438695NA
LOC_Os10g08610OsAffx.20714.2.S1_at11/1110+4441023..4444375hypothetical protein
LOC_Os10g08610OsAffx.20714.1.S1_s_at11/1110+4441023..4444375hypothetical protein
LOC_Os10g08610OsAffx.20714.1.S1_at10/1110+4441023..4444375hypothetical protein
LOC_Os10g08620OsAffx.20713.1.S1_at11/1110+4446991..4448967Chalcone synthase 8, putative
LOC_Os10g08630OsAffx.18176.1.S1_at10/1110+4449202..4451362hypothetical protein
LOC_Os10g08630OsAffx.18176.2.S1_at2/1110+4449202..4451362hypothetical protein
LOC_Os10g08640OsAffx.30341.1.S1_x_at10/1110+4451733..4452535hypothetical protein
LOC_Os10g08640OsAffx.30341.1.S1_at9/1110+4451733..4452535hypothetical protein
LOC_Os10g08640Os.9028.1.S1_at2/1110+4451733..4452535hypothetical protein
LOC_Os10g08650OsAffx.8455.1.S1_at11/1110+4454043..4456140transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g08660Os.39476.1.S1_at11/1110+4456787..4462132transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g08660OsAffx.8589.1.S1_at1/1110+4456787..4462132transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g08670OsAffx.30342.1.S1_at11/1110+4466349..4467881Chalcone and stilbene synthases, N-terminal domain containing protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20714.2.S1_at--649--7811Chr10:4442126..4442150 (25 bp)
GGTAACCAAGGTTGTGAATCACGGC
LOC_Os10g08610
OsAffx.20714.2.S1_at--108--7911Chr10:4442135..4442159 (25 bp)
GGTTGTGAATCACGGCAATTGCAGC
LOC_Os10g08610
OsAffx.20714.2.S1_at--436--7351Chr10:4442139..4442163 (25 bp)
GTGAATCACGGCAATTGCAGCGGAA
LOC_Os10g08610
OsAffx.20714.2.S1_at--975--5231Chr10:4442141..4442165 (25 bp)
GAATCACGGCAATTGCAGCGGAAAC
LOC_Os10g08610
OsAffx.20714.2.S1_at--157--9651Chr10:4442144..4442168 (25 bp)
TCACGGCAATTGCAGCGGAAACAGA
LOC_Os10g08610
OsAffx.20714.2.S1_at--1078--2471Chr10:4442163..4442187 (25 bp)
AACAGAAATGGGAGAGTGGAGCTTC
LOC_Os10g08610
OsAffx.20714.2.S1_at--221--6131Chr10:4442176..4442200 (25 bp)
GAGTGGAGCTTCAAATGACCACGCA
LOC_Os10g08610
OsAffx.20714.2.S1_at--976--8071Chr10:4442180..4442204 (25 bp)
GGAGCTTCAAATGACCACGCACAAG
LOC_Os10g08610
OsAffx.20714.2.S1_at--513--2291Chr10:4442188..4442212 (25 bp)
AAATGACCACGCACAAGTCGCGATT
LOC_Os10g08610
OsAffx.20714.2.S1_at--52--8931Chr10:4442191..4442215 (25 bp)
TGACCACGCACAAGTCGCGATTTCA
LOC_Os10g08610
OsAffx.20714.2.S1_at--146--5131Chr10:4442198..4442222 (25 bp)
GCACAAGTCGCGATTTCACTTGGCT
LOC_Os10g08610
Target Sequence 
GGTAACCAAGGTTGTGAATCACGGCAATTGCAGCGGAAACAGAAATGGGAGAGTGGAGCTTCAAATGACCACGCACAAGT
CGCGATTTCACTTGGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20714.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis