Browse Element(s) Details


OsAffx.20713.1.S1_at

Description gb:NM_195038.1
DB_XREF= gi:37531435
TID=OsAffx.20713.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative chalcone synthase (OSJNAb0015J03.16), mRNA.
PROD=putative chalcone synthase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0862011/11Chalcone synthase 8, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g08570OsAffx.18174.1.S1_at10/1110+4421729..4427909RNA recognition motif family protein, expressed
LOC_Os10g08570Os.10084.3.S1_at1/1110+4421729..4427909RNA recognition motif family protein, expressed
LOC_Os10g08580Os.46278.1.S1_a_at11/1110+4429249..4433064Deoxyribodipyrimidine photo-lyase, putative, expressed
LOC_Os10g08590OsAffx.8457.1.S1_at11/1110+4434863..4436227hypothetical protein
LOC_Os10g08599NANA10+4437906..4438695NA
LOC_Os10g08610OsAffx.20714.2.S1_at11/1110+4441023..4444375hypothetical protein
LOC_Os10g08610OsAffx.20714.1.S1_s_at11/1110+4441023..4444375hypothetical protein
LOC_Os10g08610OsAffx.20714.1.S1_at10/1110+4441023..4444375hypothetical protein
LOC_Os10g08620OsAffx.20713.1.S1_at11/1110+4446991..4448967Chalcone synthase 8, putative
LOC_Os10g08630OsAffx.18176.1.S1_at10/1110+4449202..4451362hypothetical protein
LOC_Os10g08630OsAffx.18176.2.S1_at2/1110+4449202..4451362hypothetical protein
LOC_Os10g08640OsAffx.30341.1.S1_x_at10/1110+4451733..4452535hypothetical protein
LOC_Os10g08640OsAffx.30341.1.S1_at9/1110+4451733..4452535hypothetical protein
LOC_Os10g08640Os.9028.1.S1_at2/1110+4451733..4452535hypothetical protein
LOC_Os10g08650OsAffx.8455.1.S1_at11/1110+4454043..4456140transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g08660Os.39476.1.S1_at11/1110+4456787..4462132transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g08660OsAffx.8589.1.S1_at1/1110+4456787..4462132transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g08670OsAffx.30342.1.S1_at11/1110+4466349..4467881Chalcone and stilbene synthases, N-terminal domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0009699biological_processphenylpropanoid biosynthesis
GO:0009715biological_processchalcone biosynthesis
GO:0009813biological_processflavonoid biosynthesis
GO:0009926biological_processauxin polar transport
GO:0005634cellular_componentnucleus
GO:0005783cellular_componentendoplasmic reticulum
GO:0009705cellular_componentvacuolar membrane (sensu Magnoliophyta)
GO:0016210molecular_functionnaringenin-chalcone synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20713.1.S1_at--100--8011Chr10:4448427..4448451 (25 bp)
GGATGGTGCCGGTGCAATAATCGTT
LOC_Os10g08620
OsAffx.20713.1.S1_at--386--4191Chr10:4448460..4448484 (25 bp)
CCCGTTTTCTGATGGCGAGTGCCCG
LOC_Os10g08620
OsAffx.20713.1.S1_at--478--9511Chr10:4448579..4448603 (25 bp)
TCTCTGTCCAGGTGCCAATGCTGAT
LOC_Os10g08620
OsAffx.20713.1.S1_at--999--9811Chr10:4448610..4448634 (25 bp)
TAACATCCAGCAGAGCTTGCTCGAA
LOC_Os10g08620
OsAffx.20713.1.S1_at--1133--5231Chr10:4448632..4448656 (25 bp)
GAATCCTTCCAATCGGTCGGATACA
LOC_Os10g08620
OsAffx.20713.1.S1_at--824--7191Chr10:4448647..4448671 (25 bp)
GTCGGATACACAGATCCTGACTGGA
LOC_Os10g08620
OsAffx.20713.1.S1_at--746--1951Chr10:4448666..4448690 (25 bp)
ACTGGAACAATCTCTTCTGGGCGGT
LOC_Os10g08620
OsAffx.20713.1.S1_at--521--6131Chr10:4448725..4448749 (25 bp)
GAGGGCAAGCTACAGTTGCAACCAT
LOC_Os10g08620
OsAffx.20713.1.S1_at--880--2851Chr10:4448771..4448795 (25 bp)
AAGTGCTACGCGAGTTTGGGAACAT
LOC_Os10g08620
OsAffx.20713.1.S1_at--63--9591Chr10:4448820..4448844 (25 bp)
TCTTGATGAACTATGCCACCGTCGG
LOC_Os10g08620
OsAffx.20713.1.S1_at--1077--5971Chr10:4448917..4448941 (25 bp)
GAGACAATTGTTATGCGCAACCCAT
LOC_Os10g08620
Target Sequence 
GGATGGTGCCGGTGCAATAATCGTTGGCGCAGGCCCGTTTTCTGATGGCGAGTGCCCGTTGTTCGAGATGGTTGCTGCCT
CACAGACCATGATACCAGGAACCGAGCACGCACTTGGCATGCAGGCCACTAGCACCGGCATAGATTTCCACCTCTCTGTC
CAGGTGCCAATGCTGATCAAGGATAACATCCAGCAGAGCTTGCTCGAATCCTTCCAATCGGTCGGATACACAGATCCTGA
CTGGAACAATCTCTTCTGGGCGGTGCACCCCGGCGGCCGTGCTATCCTTGACAACATAGAGGGCAAGCTACAGTTGCAAC
CATGGAAGCTTGCAGCAAGCCGGCAAGTGCTACGCGAGTTTGGGAACATGAGTGGTGCAACTATTGCATTCGTTCTTGAT
GAACTATGCCACCGTCGGGAGAAGGACGAAGATGAGTCACAGCAGCATGAATGGGGAGTGATGCTGGCCTTTGGACCAGG
GATCACAATTGAGACAATTGTTATGCGCAACCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20713.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis