Browse Element(s) Details


OsAffx.18174.1.S1_at

Description tigr:9638.m00727
TID=OsAffx.18174.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0857010/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g08540Os.23185.1.S1_at10/1110+4395411..4402922Cytochrome P450 family protein, expressed
LOC_Os10g08550Os.2232.1.S1_a_at11/1110+4405766..4410384Enolase, putative, expressed
LOC_Os10g08550Os.2232.3.S1_x_at11/1110+4405766..4410384Enolase, putative, expressed
LOC_Os10g08550Os.57462.1.S1_x_at4/1110+4405766..4410384Enolase, putative, expressed
LOC_Os10g08560Os.27691.2.S1_x_at11/1110+4419535..4420535retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08560Os.27691.2.S1_at11/1110+4419535..4420535retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08570OsAffx.18174.1.S1_at10/1110+4421729..4427909RNA recognition motif family protein, expressed
LOC_Os10g08570Os.10084.3.S1_at1/1110+4421729..4427909RNA recognition motif family protein, expressed
LOC_Os10g08580Os.46278.1.S1_a_at11/1110+4429249..4433064Deoxyribodipyrimidine photo-lyase, putative, expressed
LOC_Os10g08590OsAffx.8457.1.S1_at11/1110+4434863..4436227hypothetical protein
LOC_Os10g08599NANA10+4437906..4438695NA
LOC_Os10g08610OsAffx.20714.2.S1_at11/1110+4441023..4444375hypothetical protein
LOC_Os10g08610OsAffx.20714.1.S1_s_at11/1110+4441023..4444375hypothetical protein
LOC_Os10g08610OsAffx.20714.1.S1_at10/1110+4441023..4444375hypothetical protein
LOC_Os10g08620OsAffx.20713.1.S1_at11/1110+4446991..4448967Chalcone synthase 8, putative
LOC_Os10g08630OsAffx.18176.1.S1_at10/1110+4449202..4451362hypothetical protein
LOC_Os10g08630OsAffx.18176.2.S1_at2/1110+4449202..4451362hypothetical protein
LOC_Os10g08640OsAffx.30341.1.S1_x_at10/1110+4451733..4452535hypothetical protein
LOC_Os10g08640OsAffx.30341.1.S1_at9/1110+4451733..4452535hypothetical protein
LOC_Os10g08640Os.9028.1.S1_at2/1110+4451733..4452535hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18174.1.S1_at--229--8871Chr10:4425600..4425624 (25 bp)
TGATGACGTTAAGCTGCCTTCGCAA
LOC_Os10g08570
OsAffx.18174.1.S1_at--66--4991Chr10:4425825..4425849 (25 bp)
GCATCCTGCAGGTTCTCGATATGTA
LOC_Os10g08570
OsAffx.18174.1.S1_at--862--1951Chr10:4425871..4425895 (25 bp)
ACTGTGGGTGCAACTTCCAGATCTA
LOC_Os10g08570
OsAffx.18174.1.S1_at--215--731Chr10:4425908..4426040 (25 bp)
ATGATTTGGCACCTCATGCTGGATT
LOC_Os10g08570
OsAffx.18174.1.S1_at--666--2311Chr10:4426064..4426088 (25 bp)
AAAGGACTCCTGCACGTGATCACCA
LOC_Os10g08570
OsAffx.18174.1.S1_at--775--5451Chr10:4426178..4426202 (25 bp)
GAACTGCACCGTACAATATCCGTCA
LOC_Os10g08570
OsAffx.18174.1.S1_at--469--251Chr10:4426193..4426217 (25 bp)
ATATCCGTCAGATCAGTGGTTCTCC
LOC_Os10g08570
OsAffx.18174.1.S1_at--476--5571Chr10:4427168..4427192 (25 bp)
GAAAGAGTAGCTCCGCGACCAGCAT
LOC_Os10g08570
OsAffx.18174.1.S1_at--731--3011NONE
AATGCTGCTGGATACGAGGCTGGAT
NONE
OsAffx.18174.1.S1_at--221--8351Chr10:4427777..4427801 (25 bp)
GGCTGGATATGCATACACCTACCTT
LOC_Os10g08570
OsAffx.18174.1.S1_at--928--10051Chr10:4427825..4427849 (25 bp)
TAGTATATCTTATCATCCACCTCCT
LOC_Os10g08570
Target Sequence 
TGATGACGTTAAGCTGCCTTCGCAAAGTGGTTTGGAAGAACCACAAACATCCAACCGTTCTAAGCGCAAAAGGAAAGTCC
GGAAGAATAGAAGTACAACTGTAAATGAAAGACCAGTGGAGAAAGCATGGAAGAATCGAAATATTAAGCATCCTGCAGGT
TCTCGATATGTAACTAGCAACCAAGCTTACCCCACTGTGGGTGCAACTTCCAGATCTAAACCACATTCCCATGATTTGGC
ACCTCATGCTGGATTCATCCCTCCTTCAAGTCGTGTTCAAAGGACTCCTGCACGTGATCACCAAAGAACTGCACCGTACA
ATATCCGTCAGATCAGTGGTTCTCCTTATGCTAGAGAAAGAGTAGCTCCGCGACCAGCATATTCTGTTCACACAAGCAAT
GCTGCTGGATACGAGGCTGGATATGCATACACCTACCTTCCCCCACCACCACCACCTCCACCTAGTATATCTTATCATCC
ACCTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18174.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis