Browse Element(s) Details


OsAffx.8457.1.S1_at

Description tigr:9638.m00729
TID=OsAffx.8457.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0859011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g08550Os.2232.1.S1_a_at11/1110+4405766..4410384Enolase, putative, expressed
LOC_Os10g08550Os.2232.3.S1_x_at11/1110+4405766..4410384Enolase, putative, expressed
LOC_Os10g08550Os.57462.1.S1_x_at4/1110+4405766..4410384Enolase, putative, expressed
LOC_Os10g08560Os.27691.2.S1_x_at11/1110+4419535..4420535retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08560Os.27691.2.S1_at11/1110+4419535..4420535retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08570OsAffx.18174.1.S1_at10/1110+4421729..4427909RNA recognition motif family protein, expressed
LOC_Os10g08570Os.10084.3.S1_at1/1110+4421729..4427909RNA recognition motif family protein, expressed
LOC_Os10g08580Os.46278.1.S1_a_at11/1110+4429249..4433064Deoxyribodipyrimidine photo-lyase, putative, expressed
LOC_Os10g08590OsAffx.8457.1.S1_at11/1110+4434863..4436227hypothetical protein
LOC_Os10g08599NANA10+4437906..4438695NA
LOC_Os10g08610OsAffx.20714.2.S1_at11/1110+4441023..4444375hypothetical protein
LOC_Os10g08610OsAffx.20714.1.S1_s_at11/1110+4441023..4444375hypothetical protein
LOC_Os10g08610OsAffx.20714.1.S1_at10/1110+4441023..4444375hypothetical protein
LOC_Os10g08620OsAffx.20713.1.S1_at11/1110+4446991..4448967Chalcone synthase 8, putative
LOC_Os10g08630OsAffx.18176.1.S1_at10/1110+4449202..4451362hypothetical protein
LOC_Os10g08630OsAffx.18176.2.S1_at2/1110+4449202..4451362hypothetical protein
LOC_Os10g08640OsAffx.30341.1.S1_x_at10/1110+4451733..4452535hypothetical protein
LOC_Os10g08640OsAffx.30341.1.S1_at9/1110+4451733..4452535hypothetical protein
LOC_Os10g08640Os.9028.1.S1_at2/1110+4451733..4452535hypothetical protein
LOC_Os10g08650OsAffx.8455.1.S1_at11/1110+4454043..4456140transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g08660Os.39476.1.S1_at11/1110+4456787..4462132transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g08660OsAffx.8589.1.S1_at1/1110+4456787..4462132transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8457.1.S1_at--1030--1132Chr02:13006320..13006342 (23 bp)
AGTCCTTGTGTCATGAACTCGAATG
NONE
OsAffx.8457.1.S1_at--858--2531Chr10:4435722..4435746 (25 bp)
AACTCGAATGTTCCCTTAATCAATT
LOC_Os10g08590
OsAffx.8457.1.S1_at--943--9733Chr04:4684640..4685103 (25 bp)
TCAATTCCATTCATTTTTCGTTAAG
NONE
OsAffx.8457.1.S1_at--57--2111Chr10:4435104..4435128 (25 bp)
ACATGTGCTCACTTCGAGCTACAAA
LOC_Os10g08590
OsAffx.8457.1.S1_at--697--2351Chr10:4435082..4435106 (25 bp)
AAAGCTCGGTGCTGAGATCACCCGT
LOC_Os10g08590
OsAffx.8457.1.S1_at--435--1271Chr10:4435068..4435092 (25 bp)
AGATCACCCGTTTCGCTGGGAGGGA
LOC_Os10g08590
OsAffx.8457.1.S1_at--397--4691Chr10:4435036..4435060 (25 bp)
GCGGAGAGAATCGATGCTACCAGGA
LOC_Os10g08590
OsAffx.8457.1.S1_at--306--611Chr10:4435023..4435047 (25 bp)
ATGCTACCAGGATGGTCGAGTTCTT
LOC_Os10g08590
OsAffx.8457.1.S1_at--470--9571Chr10:4435002..4435026 (25 bp)
TCTTGGTCACCAATATCGTTGGCGA
LOC_Os10g08590
OsAffx.8457.1.S1_at--75--1251Chr10:4434957..4434981 (25 bp)
AGTTGTCAAATCATTCAGTTCACGA
LOC_Os10g08590
OsAffx.8457.1.S1_at--744--2931Chr10:4434909..4434933 (25 bp)
AAGGCACTCCAGATGCTCAAGTCCG
LOC_Os10g08590
Target Sequence 
AGTCCTTGTGTCATGAACTCGAATGTTCCCTTAATCAATTCCATTCATTTTTCGTTAAGATTCAATTACACCATTATATT
TATTGCACACATGTGCTCACTTCGAGCTACAAAGCTCGGTGCTGAGATCACCCGTTTCGCTGGGAGGGAGTGGCTGGCGG
AGAGAATCGATGCTACCAGGATGGTCGAGTTCTTGGTCACCAATATCGTTGGCGAGGAAAGGGAGGTGGCCAACAAGTTG
TCAAATCATTCAGTTCACGAAGGTGGATCCCGACGCATCCGCCAAGGCACTCCAGATGCTCAAGTCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8457.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis