Browse Element(s) Details


Os.10084.3.S1_at

Description gb:AK068456.1
DB_XREF= gi:32978474
TID=Os.10084.3
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10084 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-174-B07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013152E20, full insert sequence.
FL= gb:AK068456.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1629010/11RWP-RK domain containing protein, expressed
LOC_Os10g085701/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g16250OsAffx.30997.1.S1_at11/1111+8920692..8923585hypothetical protein
LOC_Os11g16260NANA11+8926926..8929061Multicopper oxidase family protein
LOC_Os11g16269NANA11+8942383..8943409NA
LOC_Os11g16280Os.15488.1.S2_at11/1111+8943342..8947965Leucine Rich Repeat family protein, expressed
LOC_Os11g16280Os.15488.1.S1_at11/1111+8943342..8947965Leucine Rich Repeat family protein, expressed
LOC_Os11g16290Os.10084.1.A1_at11/1111+8948028..8955365RWP-RK domain containing protein, expressed
LOC_Os11g16290Os.10084.2.A1_at10/1111+8948028..8955365RWP-RK domain containing protein, expressed
LOC_Os11g16290Os.10084.3.S1_at10/1111+8948028..8955365RWP-RK domain containing protein, expressed
LOC_Os11g16300NANA11+8955273..8956368hypothetical protein
LOC_Os11g16310NANA11+8969278..8972450hypothetical protein
LOC_Os11g16320Os.6641.1.S1_at11/1111+8978449..8982926expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009877biological_processnodulation
GO:0045449biological_processregulation of transcription
GO:0005739cellular_componentmitochondrion
GO:0003700molecular_functiontranscription factor activity
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10084.3.S1_at--762--3711Chr11:8950111..8950135 (25 bp)
CTAACAAGGTTGTTTCATCCTCAAC
LOC_Os11g16290
Os.10084.3.S1_at--80--7491Chr11:8950050..8950074 (25 bp)
GTGTGGTCTGTTTTTCTTTGTGTGC
LOC_Os11g16290
Os.10084.3.S1_at--344--3691Chr11:8950035..8950059 (25 bp)
CTTTGTGTGCTTTAGTCATTCAGAC
LOC_Os11g16290
Os.10084.3.S1_at--36--31Chr11:8950003..8950027 (25 bp)
ATTGGAAGTGATAACTCTGCAGGAT
LOC_Os11g16290
Os.10084.3.S1_at--244--2551Chr11:8949991..8950015 (25 bp)
AACTCTGCAGGATAGTTTTTTCAGT
LOC_Os11g16290
Os.10084.3.S1_at--1036--4991Chr11:8949985..8950009 (25 bp)
GCAGGATAGTTTTTTCAGTAAATTG
LOC_Os11g16290
Os.10084.3.S1_at--1033--2171Chr11:8949966..8949990 (25 bp)
AAATTGTTTGAATAGTTCCTTACAG
LOC_Os11g16290
Os.10084.3.S1_at--162--6851Chr11:8949961..8949985 (25 bp)
GTTTGAATAGTTCCTTACAGATTAA
LOC_Os11g16290
Os.10084.3.S1_at--555--291Chr11:8949896..8949920 (25 bp)
ATAGATCTGATCTCTTTGCATCATC
LOC_Os11g16290
Os.10084.3.S1_at--928--471Chr11:8949892..8949916 (25 bp)
ATCTGATCTCTTTGCATCATCTGGT
LOC_Os11g16290
Os.10084.3.S1_at--165--9071Chr10:4426323..4426384 (24 bp)
TGCATCATCTGGTGTTATTTTCGTG
LOC_Os10g08570
Target Sequence 
CTAACAAGGTTGTTTCATCCTCAACATTCTCACNTATGTGCTTTCATCCTNCTCTTATCTNGTCGTGTGGTCTGTTTTTC
TTTGTGTGCTTTAGTCATTCAGACNTGAACNATTGGAAGTGATAACTCTGCAGGATAGTTTTTTCAGTAAATTGTTTGAA
TAGTTCCTTACAGATTAAGCNTTGTCCNTTTTCTTGTGCTGCNTTGCANTTTAACTGTATAGATCTGATCTCTTTGCATC
ATCTGGTGTTATTTTCGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10084.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis