Browse Element(s) Details


Os.10084.1.A1_at

Description gb:AK064859.1
DB_XREF= gi:32974877
TID=Os.10084.1
CNT=11
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.10084 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-174-B07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000H14, full insert sequence.
FL= gb:AK064859.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1629011/11RWP-RK domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g16250OsAffx.30997.1.S1_at11/1111+8920692..8923585hypothetical protein
LOC_Os11g16260NANA11+8926926..8929061Multicopper oxidase family protein
LOC_Os11g16269NANA11+8942383..8943409NA
LOC_Os11g16280Os.15488.1.S2_at11/1111+8943342..8947965Leucine Rich Repeat family protein, expressed
LOC_Os11g16280Os.15488.1.S1_at11/1111+8943342..8947965Leucine Rich Repeat family protein, expressed
LOC_Os11g16290Os.10084.1.A1_at11/1111+8948028..8955365RWP-RK domain containing protein, expressed
LOC_Os11g16290Os.10084.2.A1_at10/1111+8948028..8955365RWP-RK domain containing protein, expressed
LOC_Os11g16290Os.10084.3.S1_at10/1111+8948028..8955365RWP-RK domain containing protein, expressed
LOC_Os11g16300NANA11+8955273..8956368hypothetical protein
LOC_Os11g16310NANA11+8969278..8972450hypothetical protein
LOC_Os11g16320Os.6641.1.S1_at11/1111+8978449..8982926expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009877biological_processnodulation
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10084.1.A1_at--538--6591Chr11:8948631..8948655 (25 bp)
GATTGCTCCACATCAAGCGGCGAAA
LOC_Os11g16290
Os.10084.1.A1_at--150--4971Chr11:8948597..8948621 (25 bp)
GCATCAAGAGTCAGTCAGCTAACGA
LOC_Os11g16290
Os.10084.1.A1_at--1152--1751Chr11:8948562..8948586 (25 bp)
ACCGTCGTCGTAAAGGCGAGCTACA
LOC_Os11g16290
Os.10084.1.A1_at--527--1011Chr11:8948523..8948547 (25 bp)
AGGTTCAAATTGCTACCATCCATGA
LOC_Os11g16290
Os.10084.1.A1_at--1031--4731Chr11:8948464..8948488 (25 bp)
GCTGAAACTGTCAATTGGCCTATTT
LOC_Os11g16290
Os.10084.1.A1_at--19--8471Chr11:8948449..8948473 (25 bp)
TGGCCTATTTCAGCTCAAGTACAAA
LOC_Os11g16290
Os.10084.1.A1_at--954--9371Chr11:8948369..8948393 (25 bp)
TCGAGATACTTGACACCACCAGGTT
LOC_Os11g16290
Os.10084.1.A1_at--782--3371Chr11:8948356..8948380 (25 bp)
CACCACCAGGTTGCGTATCTTGAAG
LOC_Os11g16290
Os.10084.1.A1_at--327--3231Chr11:8948322..8948346 (25 bp)
CAAGATGTTGTGTGTCCTATCGGAA
LOC_Os11g16290
Os.10084.1.A1_at--195--5351Chr11:8948300..8948324 (25 bp)
GAAGTTCGTCAGGTAGCTGCTCCAT
LOC_Os11g16290
Os.10084.1.A1_at--979--9091Chr11:8948283..8948307 (25 bp)
TGCTCCATGTTACGTCCATAGGTTA
LOC_Os11g16290
Target Sequence 
GATTGCTCCACATCAAGCGGCGAAACTTTCAAGAGCATCAAGAGTCAGTCAGCTAACGAAAGCAACAAAACCGTCGTCGT
AAAGGCGAGCTACAAGAATGACNCCATAAGGTTCAAATTGCTACCATCCATGAAATACGAGCAGCTGCTCGAGGAAATAG
CGAAGAGGCTGAAACTGTCAATTGGCCTATTTCAGCTCAAGTACAAAGACGATGAGGGTGACTGGGTGATTTTAGCGAGC
GATGCGNATCTCCAGGAATGCCTCGAGATACTTGACACCACCAGGTTGCGTATCTTGAAGCTTCAGGTGCAAGATGTTGT
GTGTCCTATCGGAAGTTCGTCAGGTAGCTGCTCCATGTTACGTCCATAGGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10084.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis