Browse Element(s) Details


Os.6641.1.S1_at

Description gb:CB683883
DB_XREF= gi:29687608
DB_XREF=OSJNEf12O01.r
CLONE=OSJNEf12O01
TID=Os.6641.1
CNT=13
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.6641 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_564847.1 (A.thaliana) expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1632011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g16290Os.10084.1.A1_at11/1111+8948028..8955365RWP-RK domain containing protein, expressed
LOC_Os11g16290Os.10084.2.A1_at10/1111+8948028..8955365RWP-RK domain containing protein, expressed
LOC_Os11g16290Os.10084.3.S1_at10/1111+8948028..8955365RWP-RK domain containing protein, expressed
LOC_Os11g16300NANA11+8955273..8956368hypothetical protein
LOC_Os11g16310NANA11+8969278..8972450hypothetical protein
LOC_Os11g16320Os.6641.1.S1_at11/1111+8978449..8982926expressed protein
LOC_Os11g16330Os.4902.2.S1_at11/1111+8984269..8988648F-box domain containing protein, expressed
LOC_Os11g16330Os.4902.1.S1_at11/1111+8984269..8988648F-box domain containing protein, expressed
LOC_Os11g16330OsAffx.30909.1.S1_at1/1111+8984269..8988648F-box domain containing protein, expressed
LOC_Os11g16340OsAffx.18879.1.S1_at10/1111+8996153..8997500hypothetical protein
LOC_Os11g16350OsAffx.30998.1.S1_at11/1111+9000220..9001284expressed protein
LOC_Os11g16360NANA11+9003326..9003547hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6641.1.S1_at--98--9671Chr11:8982305..8982329 (25 bp)
TCACCTGAGAAGTCTTTCTGGGCTA
LOC_Os11g16320
Os.6641.1.S1_at--656--91Chr11:8982423..8982447 (25 bp)
ATTCCTCTTGGTCTCATTGTCATGA
LOC_Os11g16320
Os.6641.1.S1_at--945--31Chr11:8982438..8982462 (25 bp)
ATTGTCATGAATGCTGTCACGGCAG
LOC_Os11g16320
Os.6641.1.S1_at--885--1071Chr11:8982516..8982540 (25 bp)
AGGGCACCAAATGCTGCTCCAAGGA
LOC_Os11g16320
Os.6641.1.S1_at--918--8831Chr11:8982546..8982570 (25 bp)
TGATATCTGTGCTGCCTATTTGGTT
LOC_Os11g16320
Os.6641.1.S1_at--664--3691Chr11:8982561..8982585 (25 bp)
CTATTTGGTTTCTATCTCGCTTGTA
LOC_Os11g16320
Os.6641.1.S1_at--637--3451Chr11:8982608..8982632 (25 bp)
CAGTACTTGGTCTGCTTAGATCCAA
LOC_Os11g16320
Os.6641.1.S1_at--412--8711Chr11:8982735..8982759 (25 bp)
TGTCCATTCTAAGTCAGTTCCTGAG
LOC_Os11g16320
Os.6641.1.S1_at--1002--4971Chr11:8982768..8982792 (25 bp)
GCATCCTTAGCTTATCAGGTCCTAA
LOC_Os11g16320
Os.6641.1.S1_at--1026--3271Chr11:8982819..8982843 (25 bp)
CACACTTGTCTTTTGTACCGGCAAT
LOC_Os11g16320
Os.6641.1.S1_at--481--9911Chr11:8982845..8982869 (25 bp)
TACTGCCCGATTTTATACTCGTAAA
LOC_Os11g16320
Target Sequence 
TCACCTGAGAAGTCTTTCTGGGCTAAATATTGGATGTACATCATTCCTCTTGGTCTCATTGTCATGAATGCTGTCACGGC
AGCAGCGAACATGCCGGAGGAGCAAGCTGGAGGGCANNGGCNAACCTGGAGCTCAAAGGGCACCAAATGCTGCTCCAAGG
AGAAGATGATATCTGTGCTGCCTATTTGGTTTCTATCTCGCTTGTAGTAATANNNAGTTGTATCATAGCAGTACTTGGTC
TGCTTAGATCCAAAGGCAATTTGCNTAGCTGGTTTTACTATCTNACAGAACTTTTAGCATTTAGCAACCAGTTGACAGAG
TACAATCAATGTGCAGTGCNAAAGNTNNTATTATCAGCTGTCCATTCTAAGTCAGTTCCTGAGAGTTTANTGCATCCTTA
GCTTATCAGGTCCTAAGAACTTACTTTTGTTTTCCGCTTTTCCACACTTGTCTTTTGTACCGGCAATTTACTGCCCGATT
TTATACTCGTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6641.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis