Browse Element(s) Details


Os.10084.2.A1_at

Description gb:AK110967.1
DB_XREF= gi:32996176
TID=Os.10084.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10084 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-174-B07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-174-B07, full insert sequence.
FL= gb:AK110967.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1629010/11RWP-RK domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g16250OsAffx.30997.1.S1_at11/1111+8920692..8923585hypothetical protein
LOC_Os11g16260NANA11+8926926..8929061Multicopper oxidase family protein
LOC_Os11g16269NANA11+8942383..8943409NA
LOC_Os11g16280Os.15488.1.S2_at11/1111+8943342..8947965Leucine Rich Repeat family protein, expressed
LOC_Os11g16280Os.15488.1.S1_at11/1111+8943342..8947965Leucine Rich Repeat family protein, expressed
LOC_Os11g16290Os.10084.1.A1_at11/1111+8948028..8955365RWP-RK domain containing protein, expressed
LOC_Os11g16290Os.10084.2.A1_at10/1111+8948028..8955365RWP-RK domain containing protein, expressed
LOC_Os11g16290Os.10084.3.S1_at10/1111+8948028..8955365RWP-RK domain containing protein, expressed
LOC_Os11g16300NANA11+8955273..8956368hypothetical protein
LOC_Os11g16310NANA11+8969278..8972450hypothetical protein
LOC_Os11g16320Os.6641.1.S1_at11/1111+8978449..8982926expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009877biological_processnodulation
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10084.2.A1_at--634--3771NONE
CTCTGCAGGGCACACATGACTTGAA
NONE
Os.10084.2.A1_at--656--3111Chr11:8953418..8953545 (25 bp)
AATTTCAGTCAATGCCTAGGGTCAG
LOC_Os11g16290
Os.10084.2.A1_at--907--6071Chr11:8953378..8953402 (25 bp)
GAGTTTCTTGTCCTTTATATCACCC
LOC_Os11g16290
Os.10084.2.A1_at--699--4991Chr11:8953254..8953278 (25 bp)
GCATGATGTATGCTCAACTGACCAT
LOC_Os11g16290
Os.10084.2.A1_at--88--8931Chr11:8953236..8953260 (25 bp)
TGACCATGAACTTTGCTAGCACACA
LOC_Os11g16290
Os.10084.2.A1_at--1145--2151Chr11:8953191..8953215 (25 bp)
ACACTCACCGAACTTGCAATTCTGG
LOC_Os11g16290
Os.10084.2.A1_at--1118--10191Chr11:8953132..8953156 (25 bp)
TATTTCTGCACAGCAGCCACGAGTT
LOC_Os11g16290
Os.10084.2.A1_at--81--10371Chr11:8953104..8953128 (25 bp)
TTTTTCCTCTAAGGCTGGTTGCTTA
LOC_Os11g16290
Os.10084.2.A1_at--704--6671Chr11:8953087..8953111 (25 bp)
GTTGCTTAGTCTCCCAGCAGATGTA
LOC_Os11g16290
Os.10084.2.A1_at--138--6772Chr11:11722124..11722148 (23 bp)
GTTAATCTCCTTTTGTCTTTCTAGA
NONE
Os.10084.2.A1_at--1002--6891Chr11:8952988..8953012 (25 bp)
GTATCCACATCTTGCTTTAAGTAGC
LOC_Os11g16290
Target Sequence 
CTCTGCAGGGCACACATGACTTGAACACACAGCACAGAAAGAATGACTAACATCAGATGGACACCTTACAAACACAATTT
CAGTCAATGCCTAGGGTCAGTCGGGAAGACAAGCTGAGTTTCTTGTCCTTTATATCACCCACAAACACAAGCCACCCCCA
ATCATCCAGAACTAGTTGGAATTTGGAAACCGGGCAATCCATCCAATCCCAAATATCCCCAATTGAGGTAGGTGATCTAG
CATGATGTATGCTCAACTGACCATGAACTTTGCTAGCACACATTTTCAAAATGTTTCTCAGGACACTCACCGAACTTGCA
ATTCTGGGAACTCTTCTAACATGAGTTATCTTTAGTCAAAATATTTCTGCACAGCAGCCACGAGTTTTTTTTTTCCTCTA
AGGCTGGTTGCTTAGTCTCCCAGCAGATGTAAAGAATAAAGACGGCCATATACATAGCTTTTGTTAATCTCCTTTTGTCT
TTCTAGAGCATCAGTAGATGCATATGTATCCACATCTTGCTTTAAGTAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10084.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis