Browse Element(s) Details


Os.15488.1.S1_at

Description gb:AK100855.1
DB_XREF= gi:32986064
TID=Os.15488.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15488 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023134E03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023123K21, full insert sequence.
FL= gb:AK100912.1 gb:AK100855.1 gb:AK100924.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1628011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g16250OsAffx.30997.1.S1_at11/1111+8920692..8923585hypothetical protein
LOC_Os11g16260NANA11+8926926..8929061Multicopper oxidase family protein
LOC_Os11g16269NANA11+8942383..8943409NA
LOC_Os11g16280Os.15488.1.S2_at11/1111+8943342..8947965Leucine Rich Repeat family protein, expressed
LOC_Os11g16280Os.15488.1.S1_at11/1111+8943342..8947965Leucine Rich Repeat family protein, expressed
LOC_Os11g16290Os.10084.1.A1_at11/1111+8948028..8955365RWP-RK domain containing protein, expressed
LOC_Os11g16290Os.10084.2.A1_at10/1111+8948028..8955365RWP-RK domain containing protein, expressed
LOC_Os11g16290Os.10084.3.S1_at10/1111+8948028..8955365RWP-RK domain containing protein, expressed
LOC_Os11g16300NANA11+8955273..8956368hypothetical protein
LOC_Os11g16310NANA11+8969278..8972450hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0009723biological_processresponse to ethylene stimulus
GO:0010105biological_processnegative regulation of ethylene mediated signaling pathway
GO:0005634cellular_componentnucleus
GO:0019005cellular_componentSCF ubiquitin ligase complex
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15488.1.S1_at--14--5951Chr11:8946480..8946504 (25 bp)
GAGCACGCCAATTGCCTTTCAAAGT
LOC_Os11g16280
Os.15488.1.S1_at--552--3671Chr11:8946495..8946519 (25 bp)
CTTTCAAAGTTATTGGCCCGCTCAC
LOC_Os11g16280
Os.15488.1.S1_at--309--3411Chr11:8946553..8946577 (25 bp)
CAGAACTACCTGACACGGCTTTAAA
LOC_Os11g16280
Os.15488.1.S1_at--1045--10591Chr11:8946590..8946614 (25 bp)
TTCTGGAGCATCATTGCAGTCCCTT
LOC_Os11g16280
Os.15488.1.S1_at--1099--9911Chr11:8946621..8946645 (25 bp)
TACTGCTGCTCTGGTATTACGGATG
LOC_Os11g16280
Os.15488.1.S1_at--825--1051Chr11:8946655..8946679 (25 bp)
AGGTGGTCTCAATCGGATGCCCTAA
LOC_Os11g16280
Os.15488.1.S1_at--233--611Chr11:8946671..8946695 (25 bp)
ATGCCCTAATTTGGTGAGTCTTGAA
LOC_Os11g16280
Os.15488.1.S1_at--179--9571Chr11:8946689..8946713 (25 bp)
TCTTGAACTCTACCGCTGCTTTAAT
LOC_Os11g16280
Os.15488.1.S1_at--329--2271Chr11:8946734..8946758 (25 bp)
AAATCTTTGCAAGGGCTGCCATGCT
LOC_Os11g16280
Os.15488.1.S1_at--1128--8211Chr11:8946823..8946847 (25 bp)
GGAATTGCCCGAATATTTCCACAAT
LOC_Os11g16280
Os.15488.1.S1_at--592--1011Chr11:8946890..8946914 (25 bp)
AGGTTGTCCAGGTACACTTTCTCAT
LOC_Os11g16280
Target Sequence 
GAGCACGCCAATTGCCTTTCAAAGTTATTGGCCCGCTCACCTTATCTTAACTTGGTCTCCCTCGCTGGGCTTACAGAACT
ACCTGACACGGCTTTAAATCAGCTGAGAATTTCTGGAGCATCATTGCAGTCCCTTTCTTTCTACTGCTGCTCTGGTATTA
CGGATGATGGTTTAGAGGTGGTCTCAATCGGATGCCCTAATTTGGTGAGTCTTGAACTCTACCGCTGCTTTAATATTACA
GATCATGGTTTGGAAAATCTTTGCAAGGGCTGCCATGCTTTGAAGAGTCTTAACCTGGGTTACTGTGTAGCCATTTCAGA
TCAAGGGATTGCTGCAATCTTTAGGAATTGCCCGAATATTTCCACAATTATCATAGCATATTGCAGAGGTTTATCCGGTG
TTGGATTCAGAGGTTGTCCAGGTACACTTTCTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15488.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis