Browse Element(s) Details


OsAffx.30997.1.S1_at

Description tigr:9639.m01466
TID=OsAffx.30997.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1625011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g15710OsAffx.18876.1.S1_at11/1111+8896745..8897035hypothetical protein
LOC_Os11g15720NANA11+8900894..8901187hypothetical protein
LOC_Os11g15730OsAffx.18877.1.S1_at11/1111+8905187..8905519hypothetical protein
LOC_Os11g15740OsAffx.7121.1.S1_at10/1111+8906428..8907289hypothetical protein
LOC_Os11g15750OsAffx.17203.1.S1_at1/1111+8913206..8918227transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g15750OsAffx.27704.1.S1_at1/1111+8913206..8918227transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g15750Os.43636.1.S1_at1/1111+8913206..8918227transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g16250OsAffx.30997.1.S1_at11/1111+8920692..8923585hypothetical protein
LOC_Os11g16260NANA11+8926926..8929061Multicopper oxidase family protein
LOC_Os11g16269NANA11+8942383..8943409NA
LOC_Os11g16280Os.15488.1.S2_at11/1111+8943342..8947965Leucine Rich Repeat family protein, expressed
LOC_Os11g16280Os.15488.1.S1_at11/1111+8943342..8947965Leucine Rich Repeat family protein, expressed
LOC_Os11g16290Os.10084.1.A1_at11/1111+8948028..8955365RWP-RK domain containing protein, expressed
LOC_Os11g16290Os.10084.2.A1_at10/1111+8948028..8955365RWP-RK domain containing protein, expressed
LOC_Os11g16290Os.10084.3.S1_at10/1111+8948028..8955365RWP-RK domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30997.1.S1_at--411--8851Chr11:8921265..8921289 (25 bp)
TGATCTGAGGTGCTCTCCCCTGAAA
LOC_Os11g16250
OsAffx.30997.1.S1_at--737--2891Chr11:8921219..8921243 (25 bp)
AAGGTGGCACCAATGCAGGCTAGAG
LOC_Os11g16250
OsAffx.30997.1.S1_at--493--7591Chr11:8921194..8921218 (25 bp)
GGGCAGCACGCAAGTTAGTTTTCAG
LOC_Os11g16250
OsAffx.30997.1.S1_at--69--9151Chr11:8921166..8921190 (25 bp)
TGCGGGCAGTGCTAATTCGTCTTCA
LOC_Os11g16250
OsAffx.30997.1.S1_at--362--9751Chr11:8921154..8921178 (25 bp)
TAATTCGTCTTCATCTCGGCATAGG
LOC_Os11g16250
OsAffx.30997.1.S1_at--560--5351Chr11:8921046..8921070 (25 bp)
GAAGATAGACCAACAGCTCGCAGAT
LOC_Os11g16250
OsAffx.30997.1.S1_at--358--6251Chr11:8920902..8920926 (25 bp)
GATGGTGAATCTCAATCAACCCGCT
LOC_Os11g16250
OsAffx.30997.1.S1_at--85--3091Chr11:8920889..8920913 (25 bp)
AATCAACCCGCTTCGTTTGGTGATA
LOC_Os11g16250
OsAffx.30997.1.S1_at--7--8031Chr11:8920857..8920881 (25 bp)
GGAGGATACCGGCAGTCAGCACAAA
LOC_Os11g16250
OsAffx.30997.1.S1_at--1051--2871Chr11:8920801..8920825 (25 bp)
AAGGGAGAGTCCAGCAAGCTTTGTT
LOC_Os11g16250
OsAffx.30997.1.S1_at--185--8511Chr11:8920735..8920759 (25 bp)
TGGCACCGGGTAGCACAGTACGAGC
LOC_Os11g16250
Target Sequence 
TGATCTGAGGTGCTCTCCCCTGAAACCTTTTGAGAGGAAGATTAGCAAGGTGGCACCAATGCAGGCTAGAGGGGCAGCAC
GCAAGTTAGTTTTCAGAGGTGCGGGCAGTGCTAATTCGTCTTCATCTCGGCATAGGCAGGGAGAACAATGGGATGAGGCT
ATTCCACAAAGGGTAGATGCTCATGATAACTTTGAGGTAAATGAGAAAGATGGTGATGGGAAGATAGACCAACAGCTCGC
AGATGAGATCAGCAATGTTCAGGTATCTGTGCAAAAGAGAGATGAGATGCAGGCTGGACTGACAGGAGGGAGAAAGGATG
ATGCAGCTGCCCCCCAAAACCCTCAAGATGTGATGATTCCAGCGATGGTGAATCTCAATCAACCCGCTTCGTTTGGTGAT
ACGTCCATGGAGGATACCGGCAGTCAGCACAAAAGGACTCTGGATCAGCCAGGTATCAAGCAACAAGGGAGAGTCCAGCA
AGCTTTGTTGGAATATAACCGGCAAACAGAGGAACATAAACAGCTGCAGGTGGCACCGGGTAGCACAGTACGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30997.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis