Browse Element(s) Details


OsAffx.18877.1.S1_at

Description tigr:9639.m01462
TID=OsAffx.18877.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1573011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g15680Os.45173.1.S1_x_at4/1111+8882804..8884851retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g15680Os.38764.1.S1_x_at1/1111+8882804..8884851retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g15690NANA11+8885135..8889556retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g15700OsAffx.18875.1.S1_at11/1111+8892476..8893888NB-ARC domain containing protein, expressed
LOC_Os11g15710OsAffx.18876.1.S1_at11/1111+8896745..8897035hypothetical protein
LOC_Os11g15720NANA11+8900894..8901187hypothetical protein
LOC_Os11g15730OsAffx.18877.1.S1_at11/1111+8905187..8905519hypothetical protein
LOC_Os11g15740OsAffx.7121.1.S1_at10/1111+8906428..8907289hypothetical protein
LOC_Os11g15750OsAffx.17203.1.S1_at1/1111+8913206..8918227transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g15750OsAffx.27704.1.S1_at1/1111+8913206..8918227transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g15750Os.43636.1.S1_at1/1111+8913206..8918227transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g16250OsAffx.30997.1.S1_at11/1111+8920692..8923585hypothetical protein
LOC_Os11g16260NANA11+8926926..8929061Multicopper oxidase family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18877.1.S1_at--147--5191Chr11:8905412..8905436 (25 bp)
GAATCGACTTTTTTAGAAGGTTCAT
LOC_Os11g15730
OsAffx.18877.1.S1_at--1003--5671Chr11:8905417..8905441 (25 bp)
GACTTTTTTAGAAGGTTCATCTGGC
LOC_Os11g15730
OsAffx.18877.1.S1_at--311--3671Chr11:8905419..8905443 (25 bp)
CTTTTTTAGAAGGTTCATCTGGCAA
LOC_Os11g15730
OsAffx.18877.1.S1_at--476--10351Chr11:8905421..8905445 (25 bp)
TTTTTAGAAGGTTCATCTGGCAAGA
LOC_Os11g15730
OsAffx.18877.1.S1_at--773--10271Chr11:8905423..8905447 (25 bp)
TTTAGAAGGTTCATCTGGCAAGAAG
LOC_Os11g15730
OsAffx.18877.1.S1_at--749--5311Chr11:8905427..8905451 (25 bp)
GAAGGTTCATCTGGCAAGAAGGCCA
LOC_Os11g15730
OsAffx.18877.1.S1_at--358--3231Chr11:8905441..8905465 (25 bp)
CAAGAAGGCCAGGAAATTAGAAAGT
LOC_Os11g15730
OsAffx.18877.1.S1_at--1123--3091Chr11:8905455..8905479 (25 bp)
AATTAGAAAGTATCACTGGGTTCAA
LOC_Os11g15730
OsAffx.18877.1.S1_at--667--5571Chr11:8905460..8905484 (25 bp)
GAAAGTATCACTGGGTTCAATGGCA
LOC_Os11g15730
OsAffx.18877.1.S1_at--973--2831Chr11:8905462..8905486 (25 bp)
AAGTATCACTGGGTTCAATGGCAGG
LOC_Os11g15730
OsAffx.18877.1.S1_at--682--1191Chr11:8905463..8905487 (25 bp)
AGTATCACTGGGTTCAATGGCAGGA
LOC_Os11g15730
Target Sequence 
GAATCGACTTTTTTAGAAGGTTCATCTGGCAAGAAGGCCAGGAAATTAGAAAGTATCACTGGGTTCAATGGCAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18877.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis