Browse Element(s) Details


OsAffx.17203.1.S1_at

Description tigr:9636.m02795
TID=OsAffx.17203.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2825011/11hypothetical protein
LOC_Os11g157501/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g28214OsAffx.29395.1.S1_at11/118+17081287..17088397Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os08g28214Os.53233.1.S1_at11/118+17081287..17088397Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os08g28214Os.7693.1.S1_s_at11/118+17081287..17088397Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os08g28230OsAffx.5963.1.S1_at11/118+17092535..17094947Iron-sulfur cluster assembly accessory protein
LOC_Os08g28240OsAffx.17202.1.S1_at10/118+17096324..17102645Retinal pigment epithelial membrane protein
LOC_Os08g28250OsAffx.17203.1.S1_at11/118+17107318..17108390hypothetical protein
LOC_Os08g28260OsAffx.17204.1.S1_at11/118+17114386..17116450hypothetical protein
LOC_Os08g28270OsAffx.17205.1.S1_at11/118+17124867..17125248hypothetical protein
LOC_Os08g28280Os.40360.1.S1_x_at1/118+17130823..17132650hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17203.1.S1_at--69--2951Chr08:17107370..17107394 (25 bp)
AAGGCCTGGCTTTGGCGAAGCTCGC
LOC_Os08g28250
OsAffx.17203.1.S1_at--343--4471Chr08:17107397..17107421 (25 bp)
GCCTCGCGATATGGCTTTCATCATA
LOC_Os08g28250
OsAffx.17203.1.S1_at--622--4191Chr08:17107432..17107456 (25 bp)
CCGCGTAGTCTTCTTCTGACAAGGT
LOC_Os08g28250
OsAffx.17203.1.S1_at--752--8951Chr08:17107448..17107472 (25 bp)
TGACAAGGTCCATCTCCAGCGAAGT
LOC_Os08g28250
OsAffx.17203.1.S1_at--874--2851Chr08:17107469..17107493 (25 bp)
AAGTCCGTGTGCTTCGCAACATGGC
LOC_Os08g28250
OsAffx.17203.1.S1_at--371--4951Chr08:17108172..17108191 (20 bp)
GCAAGGCCTTTCTGTACTTTTCGGT
LOC_Os08g28250
OsAffx.17203.1.S1_at--848--2031Chr08:17108182..17108206 (25 bp)
ACTTTTCGGTCATGGCTCCTCGTAA
LOC_Os08g28250
OsAffx.17203.1.S1_at--72--531Chr08:17108247..17108271 (25 bp)
ATCGACGAAGAGCACACCGGGTATC
LOC_Os08g28250
OsAffx.17203.1.S1_at--396--432Chr11:8913287..8913306 (20 bp)
ATCTTGGTGCTTCGCTCATTGATGA
LOC_Os11g15750
OsAffx.17203.1.S1_at--37--1631Chr08:17108308..17108332 (25 bp)
AGCTGGTTTCGATCAGGGTCGTGAC
LOC_Os08g28250
OsAffx.17203.1.S1_at--659--2751Chr08:17108335..17108359 (25 bp)
AAGAACAGGCCTTTGCCTCTGGCAA
LOC_Os08g28250
Target Sequence 
AAGGCCTGGCTTTGGCGAAGCTCGCGTGCCTCGCGATATGGCTTTCATCATACAGCCTTCGCCCGCGTAGTCTTCTTCTG
ACAAGGTCCATCTCCAGCGAAGTCCGTGTGCTTCGCAACATGGCTTTCGCCATGTGGCTTTCACCCATGCAGCCTTCTCG
GGTGTGGAGCGCAACTGCGTCCCCTCGGTCTTCGCCGTCTGGTCGAAGGACCTCGTGGTATACCTCCAACAAGCCCCTCA
CGGGCAAGGCCTTTCTGTACTTTTCGGTCATGGCTCCTCGTAAACCTGCTCCTGCTTCGACCACTGGTCTAGACCCGGGA
AAGATCGACGAAGAGCACACCGGGTATCTTGGTGCTTCGCTCATTGATGAGGCGGAGCTAGCGAAGCTGGTTTCGATCAG
GGTCGTGACCGAAGAACAGGCCTTTGCCTCTGGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17203.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis