Browse Element(s) Details


OsAffx.17202.1.S1_at

Description tigr:9636.m02794
TID=OsAffx.17202.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=nine-cis-epoxycarotenoid dioxygenase1, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2824010/11Retinal pigment epithelial membrane protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g28190OsAffx.29394.1.S1_s_at11/118+17071842..17076528Actin-like protein 2, putative, expressed
LOC_Os08g28190OsAffx.29394.1.S1_at9/118+17071842..17076528Actin-like protein 2, putative, expressed
LOC_Os08g28200Os.52946.1.S1_at4/118+17078872..17079543expressed protein
LOC_Os08g28200OsAffx.13417.1.S1_x_at1/118+17078872..17079543expressed protein
LOC_Os08g28214OsAffx.29395.1.S1_at11/118+17081287..17088397Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os08g28214Os.53233.1.S1_at11/118+17081287..17088397Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os08g28214Os.7693.1.S1_s_at11/118+17081287..17088397Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os08g28230OsAffx.5963.1.S1_at11/118+17092535..17094947Iron-sulfur cluster assembly accessory protein
LOC_Os08g28240OsAffx.17202.1.S1_at10/118+17096324..17102645Retinal pigment epithelial membrane protein
LOC_Os08g28250OsAffx.17203.1.S1_at11/118+17107318..17108390hypothetical protein
LOC_Os08g28260OsAffx.17204.1.S1_at11/118+17114386..17116450hypothetical protein
LOC_Os08g28270OsAffx.17205.1.S1_at11/118+17124867..17125248hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009414biological_processresponse to water deprivation
GO:0009688biological_processabscisic acid biosynthesis
GO:0016118biological_processcarotenoid catabolism
GO:0042538biological_processhyperosmotic salinity response
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
GO:0009570cellular_componentchloroplast stroma
GO:0009579cellular_componentthylakoid
GO:0045549molecular_function9-cis-epoxycarotenoid dioxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17202.1.S1_at--213--9492Chr08:16678620..16678644 (25 bp)
TCTGCACATTCCATCTTGTCAATTG
NONE
OsAffx.17202.1.S1_at--490--7671Chr08:17098451..17098475 (25 bp)
GGGATTTCATGTACCAAGTTCTGCG
LOC_Os08g28240
OsAffx.17202.1.S1_at--1045--2812Chr08:16686953..16686977 (25 bp)
AAGTTCTGCGATTATGGGTCCAAGG
NONE
OsAffx.17202.1.S1_at--559--7951Chr08:17098394..17098418 (25 bp)
GGATACTTCCAGTCAAGAACCAAAT
LOC_Os08g28240
OsAffx.17202.1.S1_at--993--6251Chr08:17098288..17098312 (25 bp)
GATGTTGCCTTGGAATTCCCAGTTA
LOC_Os08g28240
OsAffx.17202.1.S1_at--568--271Chr08:17098260..17098284 (25 bp)
ATGATAAATTTTCTGGCCTACGCCA
LOC_Os08g28240
OsAffx.17202.1.S1_at--612--8451NONE
TGGCCTACGCCATAGTCTAAATCTT
NONE
OsAffx.17202.1.S1_at--771--2251Chr08:17097095..17097119 (25 bp)
AAATCTTGCAGCTCGACCAAAGTTT
LOC_Os08g28240
OsAffx.17202.1.S1_at--668--8031Chr08:17096848..17096872 (25 bp)
GGAGTAACGTTTGTGCCTAAGGCAG
LOC_Os08g28240
OsAffx.17202.1.S1_at--248--8251Chr08:17096460..17096480 (21 bp)
GGCAGCAGGATCAAATTCGTATGGT
LOC_Os08g28240
OsAffx.17202.1.S1_at--1118--2991Chr08:17096435..17096459 (25 bp)
AATGCTTCATTTTCTTACGTTACAG
LOC_Os08g28240
Target Sequence 
TCTGCACATTCCATCTTGTCAATTGCTTCGAGGAAGGTCATGAGGTTGTAGTAAGGGGATTTCATGTACCAAGTTCTGCG
ATTATGGGTCCAAGGCAGAAGAACATGGTTATGGATACTTCCAGTCAAGAACCAAATGAAGAGAACTTTTCTCGCTTGTA
TGAATGGAGATTGAACCTAAAAACAAGGACTGTTGCAGGCAAATACTTAACTAGCTTAGATGTTGCCTTGGAATTCCCAG
TTATCAATGATAAATTTTCTGGCCTACGCCATAGTCTAAATCTTGCAGCTCGACCAAAGTTTATTGGTTTTGCAAAACTT
TGTCTTGAAGAAAAACAAAACATAGCTACTAAGATAGACAGAGAAGATCTAATAAAGGTAGAGTATCATCAGCTAGCAAA
AAATCAATTCTGCTCAGGAGTAACGTTTGTGCCTAAGGCAGCAGGATCAAATTCGTATGGTAATGCTTCATTTTCTTACG
TTACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17202.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis