Browse Element(s) Details


OsAffx.17204.1.S1_at

Description tigr:9636.m02796
TID=OsAffx.17204.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2826011/11hypothetical protein
LOC_Os04g194301/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g28230OsAffx.5963.1.S1_at11/118+17092535..17094947Iron-sulfur cluster assembly accessory protein
LOC_Os08g28240OsAffx.17202.1.S1_at10/118+17096324..17102645Retinal pigment epithelial membrane protein
LOC_Os08g28250OsAffx.17203.1.S1_at11/118+17107318..17108390hypothetical protein
LOC_Os08g28260OsAffx.17204.1.S1_at11/118+17114386..17116450hypothetical protein
LOC_Os08g28270OsAffx.17205.1.S1_at11/118+17124867..17125248hypothetical protein
LOC_Os08g28280Os.40360.1.S1_x_at1/118+17130823..17132650hypothetical protein
LOC_Os08g28290OsAffx.29146.4.S1_s_at2/118+17135529..17136068hypothetical protein
LOC_Os08g28300NANA8+17139367..17139708hypothetical protein
LOC_Os08g28310OsAffx.10637.3.S1_s_at10/118+17141376..17144946transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g28310OsAffx.10637.4.S1_s_at8/118+17141376..17144946transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g28310OsAffx.10637.1.S1_s_at8/118+17141376..17144946transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17204.1.S1_at--1135--7711Chr08:17115941..17115965 (25 bp)
GGGTGTCCCATAATTTCATGCTCAA
LOC_Os08g28260
OsAffx.17204.1.S1_at--241--791Chr08:17115994..17116018 (25 bp)
ATGTGATCTTGAGGCCAGTGTCAGC
LOC_Os08g28260
OsAffx.17204.1.S1_at--279--4431Chr08:17116034..17116058 (25 bp)
GCCTTCGACAAGCTGAACTATACGG
LOC_Os08g28260
OsAffx.17204.1.S1_at--491--2571Chr08:17116086..17116110 (25 bp)
AACTGGCTGACTCCTCTGTCTGCTA
LOC_Os08g28260
OsAffx.17204.1.S1_at--97--9491Chr08:17116104..17116128 (25 bp)
TCTGCTATCCAGTGGGCATCGCCGA
LOC_Os08g28260
OsAffx.17204.1.S1_at--853--7271Chr08:17116133..17116157 (25 bp)
GTGCCAATAAAAGTCAGGGATTTCT
LOC_Os08g28260
OsAffx.17204.1.S1_at--1042--3511Chr08:17116159..17116183 (25 bp)
CATCCTAGTGGATTTCGTCGAACTT
LOC_Os08g28260
OsAffx.17204.1.S1_at--626--352Chr08:17116197..17116221 (25 bp)
ATAAGGAGACGCCTTTGATTCTGGG
LOC_Os08g28260
OsAffx.17204.1.S1_at--643--5931Chr08:17116298..17116322 (25 bp)
GAGCAGAAATTCAACTTTAGACCAA
LOC_Os08g28260
OsAffx.17204.1.S1_at--653--3071Chr08:17116353..17116377 (25 bp)
AATACGACCTGAATGCACGGAACAT
LOC_Os08g28260
OsAffx.17204.1.S1_at--376--4531Chr08:17116396..17116420 (25 bp)
GCCGCCAAAAATGGACAGCCTCGTA
LOC_Os08g28260
Target Sequence 
GGGTGTCCCATAATTTCATGCTCAATTGGGACACAACACTTCGATCAGGCCCAATGTGATCTTGAGGCCAGTGTCAGCGT
GATGCCGAAGGACGCCTTCGACAAGCTGAACTATACGGGGTTGATTCCAACACCGATGAGGCTCCAACTGGCTGACTCCT
CTGTCTGCTATCCAGTGGGCATCGCCGAGGATGTGCCAATAAAAGTCAGGGATTTCTTCATCCTAGTGGATTTCGTCGAA
CTTGAGGTGGAGTTAGATAAGGAGACGCCTTTGATTCTGGGGCGTCCATTTTTGAGTACCGCGGAAGCCAACATTGATGT
GGGGGCTGGGAACATCCGGTTCCACATCAATGGAAAGGAGCAGAAATTCAACTTTAGACCAAGAGCAGAGCAATGCTCTA
TGGTCAAGATCAAATACGACCTGAATGCACGGAACATGAAGGAAGTTGAAGTGCAGCCGCCAAAAATGGACAGCCTCGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17204.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis