Browse Element(s) Details


OsAffx.5963.1.S1_at

Description tigr:9636.m02793
TID=OsAffx.5963.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Iron-sulfur cluster assembly accessory protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2823011/11Iron-sulfur cluster assembly accessory protein
LOC_Os08g276303/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g28180Os.24203.1.A1_at11/118+17066467..17070235pentatricopeptide, putative, expressed
LOC_Os08g28190OsAffx.29394.1.S1_s_at11/118+17071842..17076528Actin-like protein 2, putative, expressed
LOC_Os08g28190OsAffx.29394.1.S1_at9/118+17071842..17076528Actin-like protein 2, putative, expressed
LOC_Os08g28200Os.52946.1.S1_at4/118+17078872..17079543expressed protein
LOC_Os08g28200OsAffx.13417.1.S1_x_at1/118+17078872..17079543expressed protein
LOC_Os08g28214OsAffx.29395.1.S1_at11/118+17081287..17088397Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os08g28214Os.53233.1.S1_at11/118+17081287..17088397Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os08g28214Os.7693.1.S1_s_at11/118+17081287..17088397Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os08g28230OsAffx.5963.1.S1_at11/118+17092535..17094947Iron-sulfur cluster assembly accessory protein
LOC_Os08g28240OsAffx.17202.1.S1_at10/118+17096324..17102645Retinal pigment epithelial membrane protein
LOC_Os08g28250OsAffx.17203.1.S1_at11/118+17107318..17108390hypothetical protein
LOC_Os08g28260OsAffx.17204.1.S1_at11/118+17114386..17116450hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016226biological_processiron-sulfur cluster assembly
GO:0009570cellular_componentchloroplast stroma
GO:0005198molecular_functionstructural molecule activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5963.1.S1_at--1160--5032Chr08:17092691..17092715 (25 bp)
GCAGACCCGGATACCGTGCACATGA
LOC_Os08g28230
OsAffx.5963.1.S1_at--528--4251Chr08:17092704..17092728 (25 bp)
CCGTGCACATGACGGATGGCTGCAT
LOC_Os08g28230
OsAffx.5963.1.S1_at--1109--8732Chr08:17094011..17094035 (25 bp)
TGCTAAAGAACCACCTTCTGAAGGT
LOC_Os08g28230
OsAffx.5963.1.S1_at--475--5411Chr08:17094057..17094081 (25 bp)
GAAGCTGGTGGATGTTCTGGATTCC
LOC_Os08g28230
OsAffx.5963.1.S1_at--170--3911Chr08:17094073..17094097 (25 bp)
CTGGATTCCAATATTCTTTCTCTCT
LOC_Os08g28230
OsAffx.5963.1.S1_at--223--231Chr08:17094083..17094107 (25 bp)
ATATTCTTTCTCTCTTGATGACAAG
LOC_Os08g28230
OsAffx.5963.1.S1_at--110--7532Chr08:17094338..17094362 (25 bp)
GTGGACGATGTCTCATATGACTTTG
LOC_Os08g28230
OsAffx.5963.1.S1_at--905--672Chr08:17094354..17094378 (25 bp)
ATGACTTTGTGAAAGGTGCCACTGT
LOC_Os08g28230
OsAffx.5963.1.S1_at--513--8191Chr08:17094388..17094412 (25 bp)
GGAAGAACTTATACGCTCCGCATTC
LOC_Os08g28230
OsAffx.5963.1.S1_at--1017--4751Chr08:17094402..17094426 (25 bp)
GCTCCGCATTCGTGGTTAGTTTAAA
LOC_Os08g28230
OsAffx.5963.1.S1_at--1019--10771Chr08:17094444..17094468 (25 bp)
TTGATTTGAATACTCTCACCATGGA
LOC_Os08g28230
Target Sequence 
GCAGACCCGGATACCGTGCACATGACGGATGGCTGCATCCGAAGATTAAAAGAATTACATGCTAAAGAACCACCTTCTGA
AGGTAAGATGCTGCGATTAAGTGTTGAAGCTGGTGGATGTTCTGGATTCCAATATTCTTTCTCTCTTGATGACAAGAAAA
ACTCAGATGATCGGATCTTTGAGAAAGAAGGTGTTAAATTGGTTGTGGACGATGTCTCATATGACTTTGTGAAAGGTGCC
ACTGTGGATTATGAGGAAGAACTTATACGCTCCGCATTCGTGGTTAGTTTAAATTTGACCTATTTGATTCTTGATTTGAA
TACTCTCACCATGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5963.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis