Browse Element(s) Details


Os.24203.1.A1_at

Description gb:AK105602.1
DB_XREF= gi:32990811
TID=Os.24203.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24203 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-200-A07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-200-A07, full insert sequence.
FL= gb:AK105602.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2818011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g28150OsAffx.17201.1.S1_at10/118+17051492..17053073hypothetical protein
LOC_Os08g28160OsAffx.29392.1.S1_at11/118+17054441..17055775hypothetical protein
LOC_Os08g28170OsAffx.29393.1.S1_x_at11/118+17060489..17063020xanthine/uracil permease family protein, expressed
LOC_Os08g28170Os.14457.1.S1_at11/118+17060489..17063020xanthine/uracil permease family protein, expressed
LOC_Os08g28180Os.24203.1.A1_at11/118+17066467..17070235pentatricopeptide, putative, expressed
LOC_Os08g28190OsAffx.29394.1.S1_s_at11/118+17071842..17076528Actin-like protein 2, putative, expressed
LOC_Os08g28190OsAffx.29394.1.S1_at9/118+17071842..17076528Actin-like protein 2, putative, expressed
LOC_Os08g28200Os.52946.1.S1_at4/118+17078872..17079543expressed protein
LOC_Os08g28200OsAffx.13417.1.S1_x_at1/118+17078872..17079543expressed protein
LOC_Os08g28214OsAffx.29395.1.S1_at11/118+17081287..17088397Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os08g28214Os.53233.1.S1_at11/118+17081287..17088397Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os08g28214Os.7693.1.S1_s_at11/118+17081287..17088397Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os08g28230OsAffx.5963.1.S1_at11/118+17092535..17094947Iron-sulfur cluster assembly accessory protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24203.1.A1_at--145--2911Chr08:17069651..17069675 (25 bp)
AAGGTAAGCTACTTCTTCCTACTGC
LOC_Os08g28180
Os.24203.1.A1_at--855--191Chr08:17069740..17069764 (25 bp)
ATTTCTGCATCTCTTTTACTCTCCT
LOC_Os08g28180
Os.24203.1.A1_at--67--10471Chr08:17069755..17069779 (25 bp)
TTACTCTCCTTTTTTACCAGTCGAG
LOC_Os08g28180
Os.24203.1.A1_at--1023--7851Chr08:17069779..17069803 (25 bp)
GGTATGGCTATGTCCCAGGTTCAAA
LOC_Os08g28180
Os.24203.1.A1_at--606--6751Chr08:17069797..17069821 (25 bp)
GTTCAAAGGCTTGCATTGGCTACTT
LOC_Os08g28180
Os.24203.1.A1_at--479--8311Chr08:17069814..17069838 (25 bp)
GGCTACTTGGAGAAACTGCACGGCT
LOC_Os08g28180
Os.24203.1.A1_at--938--1971Chr08:17069828..17069852 (25 bp)
ACTGCACGGCTGAAATTTCTCGCGA
LOC_Os08g28180
Os.24203.1.A1_at--477--4591Chr08:17069849..17069873 (25 bp)
GCGAACCAATCGAGCTTCTGGAGAT
LOC_Os08g28180
Os.24203.1.A1_at--426--831Chr08:17069878..17069902 (25 bp)
ATGGTTGTTGGCTTCATTTGCATGA
LOC_Os08g28180
Os.24203.1.A1_at--215--9791Chr08:17069955..17069979 (25 bp)
TAAGTTTGAGTCTGTCTTCGTAGAA
LOC_Os08g28180
Os.24203.1.A1_at--608--6511Chr08:17069984..17070008 (25 bp)
GATATCTCTTGTTATATTGTCCCAG
LOC_Os08g28180
Target Sequence 
AAGGTAAGCTACTTCTTCCTACTGCAGTTCAGATATTCACTTTGAAGTTCACATGAGTGAAAAAGATTCTATGAAGCCAG
TTGTGAATAATTTCTGCATCTCTTTTACTCTCCTTTTTTACCAGTCGAGGTATGGCTATGTCCCAGGTTCAAAGGCTTGC
ATTGGCTACTTGGAGAAACTGCACGGCTGAAATTTCTCGCGAACCAATCGAGCTTCTGGAGATGGATATGGTTGTTGGCT
TCATTTGCATGATGATGCTCAAGACTTTGTTTATATTGTCCCAGCACAGGGCATCTGATAGGGTTAAGTTTGAGTCTGTC
TTCGTAGAACAGCGATATCTCTTGTTATATTGTCCCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24203.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis