Browse Element(s) Details


Os.14457.1.S1_at

Description gb:AK106407.1
DB_XREF= gi:32991616
TID=Os.14457.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14457 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-102-H04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-102-H04, full insert sequence.
FL= gb:AK106407.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2817011/11xanthine/uracil permease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g28130NANA8+17031293..17036644hypothetical protein
LOC_Os08g28140Os.46012.2.S1_x_at4/118+17038863..17040428hypothetical protein
LOC_Os08g28140Os.46012.3.S1_x_at1/118+17038863..17040428hypothetical protein
LOC_Os08g28140Os.27088.1.A1_x_at1/118+17038863..17040428hypothetical protein
LOC_Os08g28150OsAffx.17201.1.S1_at10/118+17051492..17053073hypothetical protein
LOC_Os08g28160OsAffx.29392.1.S1_at11/118+17054441..17055775hypothetical protein
LOC_Os08g28170OsAffx.29393.1.S1_x_at11/118+17060489..17063020xanthine/uracil permease family protein, expressed
LOC_Os08g28170Os.14457.1.S1_at11/118+17060489..17063020xanthine/uracil permease family protein, expressed
LOC_Os08g28180Os.24203.1.A1_at11/118+17066467..17070235pentatricopeptide, putative, expressed
LOC_Os08g28190OsAffx.29394.1.S1_s_at11/118+17071842..17076528Actin-like protein 2, putative, expressed
LOC_Os08g28190OsAffx.29394.1.S1_at9/118+17071842..17076528Actin-like protein 2, putative, expressed
LOC_Os08g28200Os.52946.1.S1_at4/118+17078872..17079543expressed protein
LOC_Os08g28200OsAffx.13417.1.S1_x_at1/118+17078872..17079543expressed protein
LOC_Os08g28214OsAffx.29395.1.S1_at11/118+17081287..17088397Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os08g28214Os.53233.1.S1_at11/118+17081287..17088397Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os08g28214Os.7693.1.S1_s_at11/118+17081287..17088397Tesmin/TSO1-like CXC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0015646molecular_functionpermease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14457.1.S1_at--1049--10631Chr08:17062692..17062716 (25 bp)
TTCCCTCCATCTTAAAGACAAGCTC
LOC_Os08g28170
Os.14457.1.S1_at--339--2611Chr08:17062736..17062760 (25 bp)
AAGCATTAGGAATGGAAGCCGGCCA
LOC_Os08g28170
Os.14457.1.S1_at--955--5411Chr08:17062750..17062774 (25 bp)
GAAGCCGGCCATTGAGTGAATCTAA
LOC_Os08g28170
Os.14457.1.S1_at--728--10771Chr08:17062761..17062785 (25 bp)
TTGAGTGAATCTAACCATCCCCACC
LOC_Os08g28170
Os.14457.1.S1_at--1010--3531Chr08:17062776..17062800 (25 bp)
CATCCCCACCATGGTTGTAATTGTG
LOC_Os08g28170
Os.14457.1.S1_at--998--31Chr08:17062795..17062819 (25 bp)
ATTGTGGTTGTGTTCTCCATAGTGA
LOC_Os08g28170
Os.14457.1.S1_at--1113--2271Chr08:17062863..17062887 (25 bp)
AAATGCTGGGAATGGCTAGAAACTC
LOC_Os08g28170
Os.14457.1.S1_at--707--1411Chr08:17062880..17062904 (25 bp)
AGAAACTCCAGTCTTTACCAGCAAG
LOC_Os08g28170
Os.14457.1.S1_at--642--6231Chr08:17062937..17062961 (25 bp)
GATGGAATGCTTGCCTGGATTCATT
LOC_Os08g28170
Os.14457.1.S1_at--41--4931Chr08:17062945..17062969 (25 bp)
GCTTGCCTGGATTCATTGTACATGC
LOC_Os08g28170
Os.14457.1.S1_at--232--3611Chr08:17062958..17062982 (25 bp)
CATTGTACATGCATTTTGAGTTCAT
LOC_Os08g28170
Target Sequence 
TTCCCTCCATCTTAAAGACAAGCTCTTGGAGGCAAGGAGAGCTAAAGCATTAGGAATGGAAGCCGGCCATTGAGTGAATC
TAACCATCCCCACCATGGTTGTAATTGTGGTTGTGTTCTCCATAGTGAAACTAAGAGTAGAGAGGTAGATGTAGAAGAAG
TAGAGCNAAAGAAATGCTGGGAATGGCTAGAAACTCCAGTCTTTACCAGCAAGAACAAAAAAAAGGATGGAAATTGGTTG
GGTTTGATGGAATGCTTGCCTGGATTCATTGTACATGCATTTTGAGTTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14457.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis