Browse Element(s) Details


OsAffx.13417.1.S1_x_at

Description tigr:9631.m04763
TID=OsAffx.13417.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g489046/11expressed protein
LOC_Os09g366902/11hypothetical protein
LOC_Os08g282001/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g48830Os.56044.1.S1_at11/113+27769185..27772095expressed protein
LOC_Os03g48840Os.10994.1.S1_at11/113+27772221..27774889ribosomal protein L18 family protein, putative, expressed
LOC_Os03g48850Os.9507.1.S2_at11/113+27776040..27784335Valyl-tRNA synthetase, putative, expressed
LOC_Os03g48850Os.9507.1.S1_at11/113+27776040..27784335Valyl-tRNA synthetase, putative, expressed
LOC_Os03g48870OsAffx.13416.1.S1_at11/113+27785552..27786497expressed protein
LOC_Os03g48880OsAffx.25629.1.S1_at11/113+27787590..27789116Leucine Rich Repeat family protein
LOC_Os03g48890OsAffx.8934.1.S1_x_at1/113+27792803..27795078Leucine Rich Repeat family protein
LOC_Os03g48890OsAffx.26563.1.S1_at1/113+27792803..27795078Leucine Rich Repeat family protein
LOC_Os03g48904Os.50733.1.A1_x_at10/113+27796146..27802647expressed protein
LOC_Os03g48904Os.52946.1.S1_at8/113+27796146..27802647expressed protein
LOC_Os03g48904OsAffx.13417.1.S1_x_at6/113+27796146..27802647expressed protein
LOC_Os03g48904Os.52635.1.S2_at1/113+27796146..27802647expressed protein
LOC_Os03g48920Os.27770.1.A1_a_at11/113+27803974..27807677expressed protein
LOC_Os03g48920Os.27770.3.A1_a_at11/113+27803974..27807677expressed protein
LOC_Os03g48930Os.9323.1.S1_at11/113+27807867..27810251Proteasome subunit beta type 2, putative, expressed
LOC_Os03g48930OsAffx.24763.1.S1_at1/113+27807867..27810251Proteasome subunit beta type 2, putative, expressed
LOC_Os03g48940Os.50932.1.S1_at10/113+27810937..27821033Chloride channel protein CLC-d, putative, expressed
LOC_Os03g48950Os.56231.1.S1_at11/113+27827117..27831535expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13417.1.S1_x_at--531--4071Chr03:27796019..27796043 (25 bp)
CGACGAGTTTAACCCTTGCACGGCT
NONE
OsAffx.13417.1.S1_x_at--1005--5992Chr09:21161819..21161843 (25 bp)
GAGTACGGCGTGACGGACATGTTCT
LOC_Os09g36690
OsAffx.13417.1.S1_x_at--582--9932Chr09:21161822..21161846 (25 bp)
TACGGCGTGACGGACATGTTCTACG
LOC_Os09g36690
OsAffx.13417.1.S1_x_at--236--4432Chr08:17079007..17079114 (25 bp)
GCCATGTCGCCGAGGGCAGTCCACG
LOC_Os08g28200
OsAffx.13417.1.S1_x_at--485--4991NONE
GCATGCTGTTGCAGCGGTTGAGTTC
NONE
OsAffx.13417.1.S1_x_at--185--3531NONE
CATGCTGTTGCAGCGGTTGAGTTCC
NONE
OsAffx.13417.1.S1_x_at--226--4751NONE
GCTGTTGCAGCGGTTGAGTTCCTGC
NONE
OsAffx.13417.1.S1_x_at--548--3871NONE
CTGTTGCAGCGGTTGAGTTCCTGCT
NONE
OsAffx.13417.1.S1_x_at--384--1633Chr03:27797201..27797225 (25 bp)
AGCGGTTGAGTTCCTGCTGGACAAC
LOC_Os03g48904
OsAffx.13417.1.S1_x_at--568--3253Chr08:17079895..17079919 (25 bp)
CAACTGTGGGCGAAGCGGCAAAATG
NONE
OsAffx.13417.1.S1_x_at--382--5413Chr08:17079906..17079930 (25 bp)
GAAGCGGCAAAATGGCTCACGAAGG
NONE
Target Sequence 
CGACGAGTTTAACCCTTGCACGGCTCTGCTGGAGTGTGAGTGCAAGAACGGCGCCGCCGCCGAGAACACGCTGCTCCGGG
CGGGCTACGGCGGGTGGCTGCTCTACTCGGCGGCGTCGGCGGGGGACATGGCGTTCGTACAGGAGCTCATGGACAGGGAC
CCCTTGCTGGTGTTTGGCGAGGGCGAGTACGGCGTGACGGACATGTTCTACGCCGCCGCGAGGGGTGGGAACGCCGAGGT
GTTCAAGCTGCTGCTGGACCACGCCATGTCGCCGAGGGCAGTCCACGCCGCCGCGAGGGGCGGCAACGTGGAGATGCTGA
GGGAGCTCATCGAGCGTCGCTCCGACGTGTCGGAGTATCTCGACTTCCGTGGATCCACCGTGCTGCATGCTGTTGCAGCG
GTTGAGTTCCTGCTGGACAACTGTGGGCGAAGCGGCAAAATGGCTCACGAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13417.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis