Browse Element(s) Details


Os.10994.1.S1_at

Description gb:AK071362.1
DB_XREF= gi:32981385
TID=Os.10994.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10994 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023093M09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023093M09, full insert sequence.
FL= gb:AK071362.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4884011/11ribosomal protein L18 family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g48810Os.9396.1.S1_at11/113+27761365..27764926permease 1, putative, expressed
LOC_Os03g48820OsAffx.13415.1.S1_at11/113+27765109..27766344hypothetical protein
LOC_Os03g48830Os.56044.1.S1_at11/113+27769185..27772095expressed protein
LOC_Os03g48840Os.10994.1.S1_at11/113+27772221..27774889ribosomal protein L18 family protein, putative, expressed
LOC_Os03g48850Os.9507.1.S2_at11/113+27776040..27784335Valyl-tRNA synthetase, putative, expressed
LOC_Os03g48850Os.9507.1.S1_at11/113+27776040..27784335Valyl-tRNA synthetase, putative, expressed
LOC_Os03g48870OsAffx.13416.1.S1_at11/113+27785552..27786497expressed protein
LOC_Os03g48880OsAffx.25629.1.S1_at11/113+27787590..27789116Leucine Rich Repeat family protein
LOC_Os03g48890OsAffx.8934.1.S1_x_at1/113+27792803..27795078Leucine Rich Repeat family protein
LOC_Os03g48890OsAffx.26563.1.S1_at1/113+27792803..27795078Leucine Rich Repeat family protein
LOC_Os03g48904Os.50733.1.A1_x_at10/113+27796146..27802647expressed protein
LOC_Os03g48904Os.52946.1.S1_at8/113+27796146..27802647expressed protein
LOC_Os03g48904OsAffx.13417.1.S1_x_at6/113+27796146..27802647expressed protein
LOC_Os03g48904Os.52635.1.S2_at1/113+27796146..27802647expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0007046biological_processribosome biogenesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10994.1.S1_at--877--3151Chr03:27774321..27774345 (25 bp)
AATTGGCCGATATGGTTATCCCTCC
LOC_Os03g48840
Os.10994.1.S1_at--839--10051Chr03:27774352..27774376 (25 bp)
TAGGGCTCCTGCAATCACCAAGTTC
LOC_Os03g48840
Os.10994.1.S1_at--446--10671Chr03:27774374..27774398 (25 bp)
TTCCTGAAGCCCTATGTTCTCAAGA
LOC_Os03g48840
Os.10994.1.S1_at--8--2411Chr03:27774409..27774433 (25 bp)
AAACAACTTTGTGAGCGCCCAGGTC
LOC_Os03g48840
Os.10994.1.S1_at--807--831Chr03:27774500..27774524 (25 bp)
ATGGAGTCCACACGTGATGTCGCCG
LOC_Os03g48840
Os.10994.1.S1_at--1114--1311Chr03:27774569..27774593 (25 bp)
AGAGGCATTCCTGCGGTGTCGGTCT
LOC_Os03g48840
Os.10994.1.S1_at--143--7631Chr03:27774603..27774627 (25 bp)
GGGACCAGACGTACCATGGCAAGGT
LOC_Os03g48840
Os.10994.1.S1_at--17--5431Chr03:27774679..27774703 (25 bp)
GAAGCCGACCATTTGTAGCATCTCT
LOC_Os03g48840
Os.10994.1.S1_at--536--9511Chr03:27774699..27774723 (25 bp)
TCTCTGCTTGCAGTTTCTGACATGT
LOC_Os03g48840
Os.10994.1.S1_at--636--9911Chr03:27774745..27774769 (25 bp)
TACTGCCGTCCTCTGAAATTTCATT
LOC_Os03g48840
Os.10994.1.S1_at--464--1551Chr03:27774772..27774796 (25 bp)
AGCTTGCATAATGTCGTCCACTGAA
LOC_Os03g48840
Target Sequence 
AATTGGCCGATATGGTTATCCCTCCTCCAGNTAGGGCTCCTGCAATCACCAAGTTCCTGAAGCCCTATGTTCTCAAGATG
CATTTCACAAACAACTTTGTGAGCGCCCAGGTCATCCACACCCCATCTGCCACGGTTGCATGCTCGGCGAGTTCACAGGA
GAAGCTTCTTAGGCCAAGCATGGAGTCCACACGTGATGTCGCCGCGGCGGCGAAGATCGGGAAGCTGCTTGGCGAGCGCC
TGCTGTTCAGAGGCATTCCTGCGGTGTCGGTCTCCATGTCAAGGGACCAGACGTACCATGGCAAGGTCAGGGCCGTCATG
GATTCTCTTAGAGCCGCCGGTGTGAAGTTGCTGTGATGGAAGCCGACCATTTGTAGCATCTCTGCTTGCAGTTTCTGACA
TGTAAATATGTTTTGTTGGGTACGTACTGCCGTCCTCTGAAATTTCATTTTAGCTTGCATAATGTCGTCCACTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10994.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis