Browse Element(s) Details


OsAffx.13416.1.S1_at

Description tigr:9631.m04760
TID=OsAffx.13416.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4887011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g48810Os.9396.1.S1_at11/113+27761365..27764926permease 1, putative, expressed
LOC_Os03g48820OsAffx.13415.1.S1_at11/113+27765109..27766344hypothetical protein
LOC_Os03g48830Os.56044.1.S1_at11/113+27769185..27772095expressed protein
LOC_Os03g48840Os.10994.1.S1_at11/113+27772221..27774889ribosomal protein L18 family protein, putative, expressed
LOC_Os03g48850Os.9507.1.S2_at11/113+27776040..27784335Valyl-tRNA synthetase, putative, expressed
LOC_Os03g48850Os.9507.1.S1_at11/113+27776040..27784335Valyl-tRNA synthetase, putative, expressed
LOC_Os03g48870OsAffx.13416.1.S1_at11/113+27785552..27786497expressed protein
LOC_Os03g48880OsAffx.25629.1.S1_at11/113+27787590..27789116Leucine Rich Repeat family protein
LOC_Os03g48890OsAffx.8934.1.S1_x_at1/113+27792803..27795078Leucine Rich Repeat family protein
LOC_Os03g48890OsAffx.26563.1.S1_at1/113+27792803..27795078Leucine Rich Repeat family protein
LOC_Os03g48904Os.50733.1.A1_x_at10/113+27796146..27802647expressed protein
LOC_Os03g48904Os.52946.1.S1_at8/113+27796146..27802647expressed protein
LOC_Os03g48904OsAffx.13417.1.S1_x_at6/113+27796146..27802647expressed protein
LOC_Os03g48904Os.52635.1.S2_at1/113+27796146..27802647expressed protein
LOC_Os03g48920Os.27770.1.A1_a_at11/113+27803974..27807677expressed protein
LOC_Os03g48920Os.27770.3.A1_a_at11/113+27803974..27807677expressed protein
LOC_Os03g48930Os.9323.1.S1_at11/113+27807867..27810251Proteasome subunit beta type 2, putative, expressed
LOC_Os03g48930OsAffx.24763.1.S1_at1/113+27807867..27810251Proteasome subunit beta type 2, putative, expressed
LOC_Os03g48940Os.50932.1.S1_at10/113+27810937..27821033Chloride channel protein CLC-d, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13416.1.S1_at--708--4611Chr03:27785741..27785765 (25 bp)
GCGAGGGACAATGTCGTCGCCTTCG
LOC_Os03g48870
OsAffx.13416.1.S1_at--26--5791Chr03:27785791..27785815 (25 bp)
GACGACTCCGGCTCCAGCCAAGAAA
LOC_Os03g48870
OsAffx.13416.1.S1_at--1160--9211Chr03:27785803..27785827 (25 bp)
TCCAGCCAAGAAACGCGCTCGAGCG
LOC_Os03g48870
OsAffx.13416.1.S1_at--134--5891Chr03:27785823..27785847 (25 bp)
GAGCGCAAGGCCAGTTTCTTGGCGC
LOC_Os03g48870
OsAffx.13416.1.S1_at--576--2951Chr03:27785829..27785853 (25 bp)
AAGGCCAGTTTCTTGGCGCGGATCA
LOC_Os03g48870
OsAffx.13416.1.S1_at--836--6831Chr03:27785836..27785860 (25 bp)
GTTTCTTGGCGCGGATCACGTCGTC
LOC_Os03g48870
OsAffx.13416.1.S1_at--786--2671Chr03:27786005..27786029 (25 bp)
AAGCGCGCCGCGGTGATGAAGGACA
LOC_Os03g48870
OsAffx.13416.1.S1_at--336--2931Chr03:27786023..27786047 (25 bp)
AAGGACATGGAGATCGAGCGCGCGT
LOC_Os03g48870
OsAffx.13416.1.S1_at--56--7371Chr03:27786111..27786135 (25 bp)
GTGACGCCGCGCTGTCGAACCGGGC
LOC_Os03g48870
OsAffx.13416.1.S1_at--58--4091Chr03:27786205..27786229 (25 bp)
CGAGCCGGGAGACGCCGAGTCGTGC
LOC_Os03g48870
OsAffx.13416.1.S1_at--611--691Chr03:27786270..27786294 (25 bp)
ATGAGGTGGGCAGCGACCGCCTGAT
LOC_Os03g48870
Target Sequence 
GCGAGGGACAATGTCGTCGCCTTCGCCAGCGGCGGCGGCGGCGTCGCGGCGACGACTCCGGCTCCAGCCAAGAAACGCGC
TCGAGCGCAAGGCCAGTTTCTTGGCGCGGATCACGTCGTCGTCGACCTCGACCCCGTCGTGAACCAAGCCAACCACCAAC
ACCAGCAACAACAACAACAACACGGCCTCCGGCGGAGGACGGCGGAGGCCGCGGAGCTCGAGCGGTGGCGGCGGCACGCG
ATGGCGTCGCTGGTGGACGCCGCGAAGCGCGCCGCGGTGATGAAGGACATGGAGATCGAGCGCGCGTGGGGCCTAAACCG
CGCGCTGGTGGCGAGGCTGCGCGGCGTGCAGGCGCAGGCGCTGGCGTGGCGTGACGCCGCGCTGTCGAACCGGGCCGAGG
CGACCGCGCTGCGCGCCGAACTGGAGCGCGCTCTCCAGCCTCCACCGCCGCCGCCGCCGCCCGCCGAGCCGGGAGACGCC
GAGTCGTGCTGCTACGGGGACAACGGCGACCTCCTAGGCGGCGGCGAGGATGAGGTGGGCAGCGACCGCCTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13416.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis