Browse Element(s) Details


OsAffx.13415.1.S1_at

Description tigr:9631.m04753
TID=OsAffx.13415.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4882011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g48780Os.12106.1.S1_at11/113+27740207..27741221Oxalate oxidase 2 precursor, putative, expressed
LOC_Os03g48810Os.9396.1.S1_at11/113+27761365..27764926permease 1, putative, expressed
LOC_Os03g48820OsAffx.13415.1.S1_at11/113+27765109..27766344hypothetical protein
LOC_Os03g48830Os.56044.1.S1_at11/113+27769185..27772095expressed protein
LOC_Os03g48840Os.10994.1.S1_at11/113+27772221..27774889ribosomal protein L18 family protein, putative, expressed
LOC_Os03g48850Os.9507.1.S2_at11/113+27776040..27784335Valyl-tRNA synthetase, putative, expressed
LOC_Os03g48850Os.9507.1.S1_at11/113+27776040..27784335Valyl-tRNA synthetase, putative, expressed
LOC_Os03g48870OsAffx.13416.1.S1_at11/113+27785552..27786497expressed protein
LOC_Os03g48880OsAffx.25629.1.S1_at11/113+27787590..27789116Leucine Rich Repeat family protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13415.1.S1_at--658--3191Chr03:27765673..27765697 (25 bp)
CAGTGCGTTCCAAGGGCGACCCAAA
LOC_Os03g48820
OsAffx.13415.1.S1_at--68--4291Chr03:27765527..27765551 (25 bp)
CCTCGGGAGATCAGGGCACAGCACC
LOC_Os03g48820
OsAffx.13415.1.S1_at--1062--391Chr03:27765518..27765542 (25 bp)
ATCAGGGCACAGCACCGGTGACCAG
LOC_Os03g48820
OsAffx.13415.1.S1_at--856--3231Chr03:27765421..27765445 (25 bp)
CAACCGGAAGAAGGGCGCAGTCAGC
LOC_Os03g48820
OsAffx.13415.1.S1_at--50--3431Chr03:27765404..27765428 (25 bp)
CAGTCAGCAATTCGCCGGACGGGAA
LOC_Os03g48820
OsAffx.13415.1.S1_at--541--8391Chr03:27765367..27765391 (25 bp)
GGCGCCGATCAGCAATTCGCCGGCA
LOC_Os03g48820
OsAffx.13415.1.S1_at--1034--3151Chr03:27765355..27765379 (25 bp)
CAATTCGCCGGCAGCCGAGTTGGGC
LOC_Os03g48820
OsAffx.13415.1.S1_at--1121--1371Chr03:27765290..27765314 (25 bp)
AGACGAAACCGGAGCCTGTCGCGGA
LOC_Os03g48820
OsAffx.13415.1.S1_at--48--2371Chr03:27765285..27765309 (25 bp)
AAACCGGAGCCTGTCGCGGAGAAGC
LOC_Os03g48820
OsAffx.13415.1.S1_at--513--491Chr03:27765189..27765213 (25 bp)
ATCGGCGGCCCAAGGCGTCAGCACG
LOC_Os03g48820
OsAffx.13415.1.S1_at--313--2891Chr03:27765147..27765171 (25 bp)
AAGGTGGTGGCGATTCCCGGCCCAT
LOC_Os03g48820
Target Sequence 
CAGTGCGTTCCAAGGGCGACCCAAACCCAAGGAGAAGGGGAAGGTCGCCGCCGGCACGAAACAGCCAACCGCGCCGGCCG
AGACGGCCACCGCATCGTCGCCCGGCGGCACGCCGGAAGAGAAGAGGAAGAGCAAGGGGAAGAAGGCCTCGGGAGATCAG
GGCACAGCACCGGTGACCAGCGACGCGCCACGCGCGCCGGCCGAGGCGGCCGGTGCGTCATCCCGAGGCCGCGACAACCC
GGCGAGCCGGCGCAACCGGAAGAAGGGCGCAGTCAGCAATTCGCCGGACGGGAAGGCCCCCCAGCCGGCGCCGATCAGCA
ATTCGCCGGCAGCCGAGTTGGGCGGCAACCGGCGGAGCGGCGGCGCGCTCGGGACGAACGGGGAGACGAAACCGGAGCCT
GTCGCGGAGAAGCCGCCGGTGGTGGAGGCCAAGTCCACCGCGCCGGCGGCGAGCGTCGTAGTGGGCCCGACCAGGCCGCC
GTCCATCGGCGGCCCAAGGCGTCAGCACGCCGGCGTGTGGGTGCCCAAGGTGGTGGCGATTCCCGGCCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13415.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis