Browse Element(s) Details


Os.56044.1.S1_at

Description gb:AK109166.1
DB_XREF= gi:32994375
TID=Os.56044.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56044 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-155-H01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-155-H01, full insert sequence.
FL= gb:AK109166.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4883011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g48810Os.9396.1.S1_at11/113+27761365..27764926permease 1, putative, expressed
LOC_Os03g48820OsAffx.13415.1.S1_at11/113+27765109..27766344hypothetical protein
LOC_Os03g48830Os.56044.1.S1_at11/113+27769185..27772095expressed protein
LOC_Os03g48840Os.10994.1.S1_at11/113+27772221..27774889ribosomal protein L18 family protein, putative, expressed
LOC_Os03g48850Os.9507.1.S2_at11/113+27776040..27784335Valyl-tRNA synthetase, putative, expressed
LOC_Os03g48850Os.9507.1.S1_at11/113+27776040..27784335Valyl-tRNA synthetase, putative, expressed
LOC_Os03g48870OsAffx.13416.1.S1_at11/113+27785552..27786497expressed protein
LOC_Os03g48880OsAffx.25629.1.S1_at11/113+27787590..27789116Leucine Rich Repeat family protein
LOC_Os03g48890OsAffx.8934.1.S1_x_at1/113+27792803..27795078Leucine Rich Repeat family protein
LOC_Os03g48890OsAffx.26563.1.S1_at1/113+27792803..27795078Leucine Rich Repeat family protein
LOC_Os03g48904Os.50733.1.A1_x_at10/113+27796146..27802647expressed protein
LOC_Os03g48904Os.52946.1.S1_at8/113+27796146..27802647expressed protein
LOC_Os03g48904OsAffx.13417.1.S1_x_at6/113+27796146..27802647expressed protein
LOC_Os03g48904Os.52635.1.S2_at1/113+27796146..27802647expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56044.1.S1_at--197--5431Chr03:27772008..27772032 (25 bp)
GAACCAGCGATGCAGGCACTGGCAC
LOC_Os03g48830
Os.56044.1.S1_at--68--531Chr03:27771840..27771864 (25 bp)
ATCGAGAGGCTGATCCGGGCCCGGA
LOC_Os03g48830
Os.56044.1.S1_at--706--3371Chr03:27771807..27771831 (25 bp)
CACCACCACGTCAAGGACTCGGAGA
LOC_Os03g48830
Os.56044.1.S1_at--574--1591Chr03:27771722..27771746 (25 bp)
AGCTCCGCGACATCCTCATCAAGAA
LOC_Os03g48830
Os.56044.1.S1_at--33--6171Chr03:27769355..27769379 (25 bp)
GAGGATTACCGGTACTCCATGGTCA
LOC_Os03g48830
Os.56044.1.S1_at--933--7831Chr03:27769345..27769369 (25 bp)
GGTACTCCATGGTCATTTTAATCCA
LOC_Os03g48830
Os.56044.1.S1_at--334--3571Chr03:27769322..27769346 (25 bp)
CATACCCAGCGGTGAACTGTAGGAA
LOC_Os03g48830
Os.56044.1.S1_at--1100--5451Chr03:27769295..27769319 (25 bp)
GAACGGATGTTTTCTTATTTGGATC
LOC_Os03g48830
Os.56044.1.S1_at--1033--2331Chr03:27769255..27769279 (25 bp)
AAAGAACTCCCACTTTTGCTGTCTT
LOC_Os03g48830
Os.56044.1.S1_at--1156--2551Chr03:27769213..27769237 (25 bp)
AACTGAGGATTTTATCATGGCATAA
LOC_Os03g48830
Os.56044.1.S1_at--860--3491Chr03:27769198..27769222 (25 bp)
CATGGCATAATATTTAGTATCTCTG
LOC_Os03g48830
Target Sequence 
GAACCAGCGATGCAGGCACTGGCACGGGCGGCGCGGGGGATCCTGCCGGCGACGGCGGCGGCGCCTGCGGCGCGAGTGCA
GCAGGCGCGGGGGATNGTGGTACATGTGAAGGACGGCAACCTGGAGCGCGCGCTGGGGGTAATGGCGCGCAAGATGCGGT
CGAGCGGCATCGAGAGGCTGATCCGGGCCCGGAGCCAGATCCACCACCACGTCAAGGACTCGGAGAAGCGGGTGCTCGCC
CGCAAGGCCCTCATGCAGCGCGTCCGCTCCCAGGAGCTCGGCAAGAAGCTCCGCGACATCCTCATCAAGAAGATCAGGGG
CCAGTGAGTGCATATTTCNTGAGGTGGCAGGAGGATTACCGGTACTCCATGGTCATTTTAATCCATACCCAGCGGTGAAC
TGTAGGAAATGAACGGATGTTTTCTTATTTGGATCCATTCATATATAAAAAAAGAACTCCCACTTTTGCTGTCTTGTATC
ANAAAAGTGGTAAACTGAGGATTTTATCATGGCATAATATTTAGTATCTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56044.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis