Browse Element(s) Details


Os.50733.1.A1_x_at

Description gb:AY220657.1
DB_XREF= gi:29292971
TID=Os.50733.1
CNT=1
FEA=RNA
TIER=ConsEnd
STK=0
UG=Os.50733 (NCBI UniGene Cluster)
UG_TITLE=Box CD snoRNA J26.2, complete sequence
DEF=Oryza sativa box CD snoRNA J26.2, complete sequence.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4890410/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g48830Os.56044.1.S1_at11/113+27769185..27772095expressed protein
LOC_Os03g48840Os.10994.1.S1_at11/113+27772221..27774889ribosomal protein L18 family protein, putative, expressed
LOC_Os03g48850Os.9507.1.S2_at11/113+27776040..27784335Valyl-tRNA synthetase, putative, expressed
LOC_Os03g48850Os.9507.1.S1_at11/113+27776040..27784335Valyl-tRNA synthetase, putative, expressed
LOC_Os03g48870OsAffx.13416.1.S1_at11/113+27785552..27786497expressed protein
LOC_Os03g48880OsAffx.25629.1.S1_at11/113+27787590..27789116Leucine Rich Repeat family protein
LOC_Os03g48890OsAffx.8934.1.S1_x_at1/113+27792803..27795078Leucine Rich Repeat family protein
LOC_Os03g48890OsAffx.26563.1.S1_at1/113+27792803..27795078Leucine Rich Repeat family protein
LOC_Os03g48904Os.50733.1.A1_x_at10/113+27796146..27802647expressed protein
LOC_Os03g48904Os.52946.1.S1_at8/113+27796146..27802647expressed protein
LOC_Os03g48904OsAffx.13417.1.S1_x_at6/113+27796146..27802647expressed protein
LOC_Os03g48904Os.52635.1.S2_at1/113+27796146..27802647expressed protein
LOC_Os03g48920Os.27770.1.A1_a_at11/113+27803974..27807677expressed protein
LOC_Os03g48920Os.27770.3.A1_a_at11/113+27803974..27807677expressed protein
LOC_Os03g48930Os.9323.1.S1_at11/113+27807867..27810251Proteasome subunit beta type 2, putative, expressed
LOC_Os03g48930OsAffx.24763.1.S1_at1/113+27807867..27810251Proteasome subunit beta type 2, putative, expressed
LOC_Os03g48940Os.50932.1.S1_at10/113+27810937..27821033Chloride channel protein CLC-d, putative, expressed
LOC_Os03g48950Os.56231.1.S1_at11/113+27827117..27831535expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50733.1.A1_x_at--442--3112Chr09:21163212..21163236 (25 bp)
AATATCCTTGAATTGTAGTCTGAAA
NONE
Os.50733.1.A1_x_at--293--573Chr09:21163215..21163239 (25 bp)
ATCCTTGAATTGTAGTCTGAAACCA
NONE
Os.50733.1.A1_x_at--177--5193Chr09:21163221..21163245 (25 bp)
GAATTGTAGTCTGAAACCAACTTCT
NONE
Os.50733.1.A1_x_at--290--4373Chr09:21163237..21163261 (25 bp)
CCAACTTCTTAATATAATGGGCAGA
NONE
Os.50733.1.A1_x_at--808--10173Chr09:21163249..21163272 (24 bp)
TATAATGGGCAGAGCTCCAACCTTC
NONE
Os.50733.1.A1_x_at--569--351Chr03:27797652..27797676 (25 bp)
ATAATGGGCAGAGCTCCAACCTTCA
LOC_Os03g48904
Os.50733.1.A1_x_at--316--2974Chr09:21163252..21163272 (21 bp)
AATGGGCAGAGCTCCAACCTTCAGA
NONE
Os.50733.1.A1_x_at--318--8654Chr09:21163254..21163283 (25 bp)
TGGGCAGAGCTCCAACCTTCAGAAA
NONE
Os.50733.1.A1_x_at--946--8254Chr09:21163256..21163285 (25 bp)
GGCAGAGCTCCAACCTTCAGAAAAA
NONE
Os.50733.1.A1_x_at--1034--5034Chr09:21163257..21163286 (25 bp)
GCAGAGCTCCAACCTTCAGAAAAAG
NONE
Os.50733.1.A1_x_at--925--5895Chr09:21163260..21163289 (25 bp)
GAGCTCCAACCTTCAGAAAAAGAGA
NONE
Target Sequence 
AATATCCTTGAATTGTAGTCTGAAACCAACTTCTTAATATAATGGGCAGAGCTCCAACCTTCAGAAAAAGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50733.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis