Browse Element(s) Details


Os.27770.3.A1_a_at

Description gb:CF331299
DB_XREF= gi:33810816
DB_XREF=NACL--07-F23.b1
CLONE=NACL--07-F23
TID=Os.27770.3
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.27770 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_564660.1 (A.thaliana) expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4892011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g48850Os.9507.1.S2_at11/113+27776040..27784335Valyl-tRNA synthetase, putative, expressed
LOC_Os03g48850Os.9507.1.S1_at11/113+27776040..27784335Valyl-tRNA synthetase, putative, expressed
LOC_Os03g48870OsAffx.13416.1.S1_at11/113+27785552..27786497expressed protein
LOC_Os03g48880OsAffx.25629.1.S1_at11/113+27787590..27789116Leucine Rich Repeat family protein
LOC_Os03g48890OsAffx.8934.1.S1_x_at1/113+27792803..27795078Leucine Rich Repeat family protein
LOC_Os03g48890OsAffx.26563.1.S1_at1/113+27792803..27795078Leucine Rich Repeat family protein
LOC_Os03g48904Os.50733.1.A1_x_at10/113+27796146..27802647expressed protein
LOC_Os03g48904Os.52946.1.S1_at8/113+27796146..27802647expressed protein
LOC_Os03g48904OsAffx.13417.1.S1_x_at6/113+27796146..27802647expressed protein
LOC_Os03g48904Os.52635.1.S2_at1/113+27796146..27802647expressed protein
LOC_Os03g48920Os.27770.1.A1_a_at11/113+27803974..27807677expressed protein
LOC_Os03g48920Os.27770.3.A1_a_at11/113+27803974..27807677expressed protein
LOC_Os03g48930Os.9323.1.S1_at11/113+27807867..27810251Proteasome subunit beta type 2, putative, expressed
LOC_Os03g48930OsAffx.24763.1.S1_at1/113+27807867..27810251Proteasome subunit beta type 2, putative, expressed
LOC_Os03g48940Os.50932.1.S1_at10/113+27810937..27821033Chloride channel protein CLC-d, putative, expressed
LOC_Os03g48950Os.56231.1.S1_at11/113+27827117..27831535expressed protein
LOC_Os03g48960NANA3+27832590..27832952hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27770.3.A1_a_at--978--5611Chr03:27805746..27805770 (25 bp)
GACAACATTGGCATTACTTCGGCAT
LOC_Os03g48920
Os.27770.3.A1_a_at--724--10871Chr03:27805753..27805777 (25 bp)
TTGGCATTACTTCGGCATCCAGATT
LOC_Os03g48920
Os.27770.3.A1_a_at--390--9891Chr03:27805760..27805784 (25 bp)
TACTTCGGCATCCAGATTGCTGCAT
LOC_Os03g48920
Os.27770.3.A1_a_at--998--8271Chr03:27805766..27805790 (25 bp)
GGCATCCAGATTGCTGCATCTCAGC
LOC_Os03g48920
Os.27770.3.A1_a_at--1114--6571Chr03:27805774..27805798 (25 bp)
GATTGCTGCATCTCAGCTTACTCAT
LOC_Os03g48920
Os.27770.3.A1_a_at--562--4971Chr03:27805781..27805802 (22 bp)
GCATCTCAGCTTACTCATCAGTTGA
LOC_Os03g48920
Os.27770.3.A1_a_at--240--9531Chr03:27805784..27806112 (25 bp)
TCTCAGCTTACTCATCAGTTGATGT
LOC_Os03g48920
Os.27770.3.A1_a_at--703--8051Chr03:27806134..27806158 (25 bp)
GGAGAAACGTTTTAATCAACTATCA
LOC_Os03g48920
Os.27770.3.A1_a_at--500--5631Chr03:27806188..27806212 (25 bp)
GACACTTGTGAATGTGAACAGCATC
LOC_Os03g48920
Os.27770.3.A1_a_at--245--9011Chr03:27806196..27806220 (25 bp)
TGAATGTGAACAGCATCAAGAGGCA
LOC_Os03g48920
Os.27770.3.A1_a_at--54--3231Chr03:27806212..27806236 (25 bp)
CAAGAGGCAGAAAGCAGGCAGCCAA
LOC_Os03g48920
Target Sequence 
GACAACATTGGCATTACTTCGGCATCCAGATTGCTGCATCTCAGCTTACTCATCAGTTGATGTGAAAAGAAGTATAGATG
ATGGGGAGAAACGTTTTAATCAACTATCAATTGAGGAAAGAGGCAAATTTGATGAAGAGACACTTGTGAATGTGAACAGC
ATCAAGAGGCAGAAAGCAGGCAGCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27770.3.A1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis