Browse Element(s) Details


Os.27770.1.A1_a_at

Description gb:CB636267
DB_XREF= gi:29631258
DB_XREF=OSJNEa01I18.r
CLONE=OSJNEa01I18
TID=Os.27770.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=4
UG=Os.27770 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_564660.1 (A.thaliana) expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4892011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g48850Os.9507.1.S2_at11/113+27776040..27784335Valyl-tRNA synthetase, putative, expressed
LOC_Os03g48850Os.9507.1.S1_at11/113+27776040..27784335Valyl-tRNA synthetase, putative, expressed
LOC_Os03g48870OsAffx.13416.1.S1_at11/113+27785552..27786497expressed protein
LOC_Os03g48880OsAffx.25629.1.S1_at11/113+27787590..27789116Leucine Rich Repeat family protein
LOC_Os03g48890OsAffx.8934.1.S1_x_at1/113+27792803..27795078Leucine Rich Repeat family protein
LOC_Os03g48890OsAffx.26563.1.S1_at1/113+27792803..27795078Leucine Rich Repeat family protein
LOC_Os03g48904Os.50733.1.A1_x_at10/113+27796146..27802647expressed protein
LOC_Os03g48904Os.52946.1.S1_at8/113+27796146..27802647expressed protein
LOC_Os03g48904OsAffx.13417.1.S1_x_at6/113+27796146..27802647expressed protein
LOC_Os03g48904Os.52635.1.S2_at1/113+27796146..27802647expressed protein
LOC_Os03g48920Os.27770.1.A1_a_at11/113+27803974..27807677expressed protein
LOC_Os03g48920Os.27770.3.A1_a_at11/113+27803974..27807677expressed protein
LOC_Os03g48930Os.9323.1.S1_at11/113+27807867..27810251Proteasome subunit beta type 2, putative, expressed
LOC_Os03g48930OsAffx.24763.1.S1_at1/113+27807867..27810251Proteasome subunit beta type 2, putative, expressed
LOC_Os03g48940Os.50932.1.S1_at10/113+27810937..27821033Chloride channel protein CLC-d, putative, expressed
LOC_Os03g48950Os.56231.1.S1_at11/113+27827117..27831535expressed protein
LOC_Os03g48960NANA3+27832590..27832952hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27770.1.A1_a_at--1155--3571Chr03:27806872..27806896 (25 bp)
CATATTGGTTGCTGCTGAGGGTGTA
LOC_Os03g48920
Os.27770.1.A1_a_at--1158--7731Chr03:27806891..27806915 (25 bp)
GGTGTACATAAGCTACCCAGTATAA
LOC_Os03g48920
Os.27770.1.A1_a_at--910--4671Chr03:27806922..27806946 (25 bp)
GCGGTGACTTGAAGACAGCTCTACA
LOC_Os03g48920
Os.27770.1.A1_a_at--987--3411Chr03:27806945..27806969 (25 bp)
CAGAAGCTTGGTGCCATACCATCAA
LOC_Os03g48920
Os.27770.1.A1_a_at--1000--9911Chr03:27807379..27807399 (21 bp)
TACTGGCAGTTGAGGTACTATGGAC
LOC_Os03g48920
Os.27770.1.A1_a_at--675--5811Chr03:27807462..27807486 (25 bp)
GACCCCTATGAAGGATGCATTTTAG
LOC_Os03g48920
Os.27770.1.A1_a_at--1147--1231Chr03:27807485..27807509 (25 bp)
AGATTCATTTTTGCCGTATTTCAGC
LOC_Os03g48920
Os.27770.1.A1_a_at--649--9151Chr03:27807496..27807520 (25 bp)
TGCCGTATTTCAGCTTATTAACTAT
LOC_Os03g48920
Os.27770.1.A1_a_at--47--3191Chr03:27807559..27807583 (25 bp)
AATTGGCCTACATCATTCTCGCAAC
LOC_Os03g48920
Os.27770.1.A1_a_at--1150--3151Chr03:27807586..27807610 (25 bp)
AATTGTACGGTAGTCTTTCCTGACA
LOC_Os03g48920
Os.27770.1.A1_a_at--360--6931Chr03:27807595..27807619 (25 bp)
GTAGTCTTTCCTGACAGTCTTTGTA
LOC_Os03g48920
Target Sequence 
CATATTGGTTGCTGCTGAGGGTGTACATAAGCTACCCAGTATAAATGGCAGCGGTGACTTGAAGACAGCTCTACAGAAGC
TTGGTGCCATACCATCAAGAAAAATACTGGCAGTTGAGGTACTATGGACTCCACAAAATGAGAATGACACATTGTCAGAA
CGAGAGCTGCTCGAAGATTACCCGCTTTTAAGACCCCTATGAAGGATGCATTTTAGATTCATTTTTGCCGTATTTCAGCT
TATTAACTATAGCTCAGGTTGTGTTGTAAAGATAGGTAACGTAAAAAAAATTGGCCTACATCATTCTCGCAACACAATTG
TACGGTAGTCTTTCCTGACAGTCTTTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27770.1.A1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis