Browse Element(s) Details


Os.52946.1.S1_at

Description gb:AK070048.1
DB_XREF= gi:32980072
TID=Os.52946.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52946 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023040O04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023040O04, full insert sequence.
FL= gb:AK070048.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g489048/11expressed protein
LOC_Os09g366904/11hypothetical protein
LOC_Os08g282004/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g48830Os.56044.1.S1_at11/113+27769185..27772095expressed protein
LOC_Os03g48840Os.10994.1.S1_at11/113+27772221..27774889ribosomal protein L18 family protein, putative, expressed
LOC_Os03g48850Os.9507.1.S2_at11/113+27776040..27784335Valyl-tRNA synthetase, putative, expressed
LOC_Os03g48850Os.9507.1.S1_at11/113+27776040..27784335Valyl-tRNA synthetase, putative, expressed
LOC_Os03g48870OsAffx.13416.1.S1_at11/113+27785552..27786497expressed protein
LOC_Os03g48880OsAffx.25629.1.S1_at11/113+27787590..27789116Leucine Rich Repeat family protein
LOC_Os03g48890OsAffx.8934.1.S1_x_at1/113+27792803..27795078Leucine Rich Repeat family protein
LOC_Os03g48890OsAffx.26563.1.S1_at1/113+27792803..27795078Leucine Rich Repeat family protein
LOC_Os03g48904Os.50733.1.A1_x_at10/113+27796146..27802647expressed protein
LOC_Os03g48904Os.52946.1.S1_at8/113+27796146..27802647expressed protein
LOC_Os03g48904OsAffx.13417.1.S1_x_at6/113+27796146..27802647expressed protein
LOC_Os03g48904Os.52635.1.S2_at1/113+27796146..27802647expressed protein
LOC_Os03g48920Os.27770.1.A1_a_at11/113+27803974..27807677expressed protein
LOC_Os03g48920Os.27770.3.A1_a_at11/113+27803974..27807677expressed protein
LOC_Os03g48930Os.9323.1.S1_at11/113+27807867..27810251Proteasome subunit beta type 2, putative, expressed
LOC_Os03g48930OsAffx.24763.1.S1_at1/113+27807867..27810251Proteasome subunit beta type 2, putative, expressed
LOC_Os03g48940Os.50932.1.S1_at10/113+27810937..27821033Chloride channel protein CLC-d, putative, expressed
LOC_Os03g48950Os.56231.1.S1_at11/113+27827117..27831535expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52946.1.S1_at--1067--1071NONE
AGGGCAGCTAGAGTCGAGGCATCTA
NONE
Os.52946.1.S1_at--348--3671NONE
CTAGAGTCGAGGCATCTACTTCTTG
NONE
Os.52946.1.S1_at--401--8433Chr08:17079261..17079285 (25 bp)
GGCCATTGCTTACTTCTGTAAAATG
LOC_Os08g28200
Os.52946.1.S1_at--465--3113Chr09:21162195..21162219 (25 bp)
AATTTTTCTTTGTGCCAATATGGAT
LOC_Os09g36690
Os.52946.1.S1_at--967--2892Chr08:17079328..17079352 (25 bp)
AAGGTAGATCCTCATTTCATCAGAA
LOC_Os08g28200
Os.52946.1.S1_at--105--8771Chr03:27796627..27796651 (25 bp)
TGTTTGGGTGAAATGTTTCCATACC
LOC_Os03g48904
Os.52946.1.S1_at--604--9951Chr03:27796648..27796672 (25 bp)
TACCCAATATCTTTTGACGTTATGA
LOC_Os03g48904
Os.52946.1.S1_at--81--5732Chr09:21162285..21162309 (25 bp)
GACGTTATGAAACCCATTTTGCCTT
LOC_Os09g36690
Os.52946.1.S1_at--154--172Chr09:21162300..21162324 (25 bp)
ATTTTGCCTTTAGATGCGCTGCAGG
LOC_Os09g36690
Os.52946.1.S1_at--363--614Chr09:21162313..21162337 (25 bp)
ATGCGCTGCAGGTTATTATCTGGTA
LOC_Os09g36690
Os.52946.1.S1_at--814--9451NONE
TCTGGTAATCGATTTCAACATGAAT
NONE
Target Sequence 
AGGGCAGCTAGAGTCGAGGCATCTACTTCTTGGCCATTGCTTACTTCTGTAAAATGCTTGATACAGTAAAATTTTTCTTT
GTGCCAATATGGATGACAAAGGTAGATCCTCATTTCATCAGAATGTTTGGGTGAAATGTTTCCATACCCAATATCTTTTG
ACGTTATGAAACCCATTTTGCCTTTAGATGCGCTGCAGGTTATTATCTGGTAATCGATTTCAACATGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52946.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis