Browse Element(s) Details


OsAffx.17201.1.S1_at

Description tigr:9636.m02784
TID=OsAffx.17201.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2815010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g28130NANA8+17031293..17036644hypothetical protein
LOC_Os08g28140Os.46012.2.S1_x_at4/118+17038863..17040428hypothetical protein
LOC_Os08g28140Os.46012.3.S1_x_at1/118+17038863..17040428hypothetical protein
LOC_Os08g28140Os.27088.1.A1_x_at1/118+17038863..17040428hypothetical protein
LOC_Os08g28150OsAffx.17201.1.S1_at10/118+17051492..17053073hypothetical protein
LOC_Os08g28160OsAffx.29392.1.S1_at11/118+17054441..17055775hypothetical protein
LOC_Os08g28170OsAffx.29393.1.S1_x_at11/118+17060489..17063020xanthine/uracil permease family protein, expressed
LOC_Os08g28170Os.14457.1.S1_at11/118+17060489..17063020xanthine/uracil permease family protein, expressed
LOC_Os08g28180Os.24203.1.A1_at11/118+17066467..17070235pentatricopeptide, putative, expressed
LOC_Os08g28190OsAffx.29394.1.S1_s_at11/118+17071842..17076528Actin-like protein 2, putative, expressed
LOC_Os08g28190OsAffx.29394.1.S1_at9/118+17071842..17076528Actin-like protein 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17201.1.S1_at--695--731Chr08:17052691..17052715 (25 bp)
ATGTTGCTTTTCTATCCTTTGCATT
LOC_Os08g28150
OsAffx.17201.1.S1_at--675--4891Chr08:17052686..17052710 (25 bp)
GCTTTTCTATCCTTTGCATTAGCCA
LOC_Os08g28150
OsAffx.17201.1.S1_at--38--10731Chr08:17052673..17052697 (25 bp)
TTGCATTAGCCAAACTACACTTGTA
LOC_Os08g28150
OsAffx.17201.1.S1_at--761--2011Chr08:17052660..17052684 (25 bp)
ACTACACTTGTATAGAGTACCACAG
LOC_Os08g28150
OsAffx.17201.1.S1_at--614--6071NONE
GAGTACCACAGGTTACCACAAAAAT
NONE
OsAffx.17201.1.S1_at--982--9471Chr08:17051605..17051629 (25 bp)
TCTGAAGATTATGCTCTTCACCCTC
LOC_Os08g28150
OsAffx.17201.1.S1_at--823--9251Chr08:17051582..17051606 (25 bp)
TCCTGTCCATACCACTCGAGATAAG
LOC_Os08g28150
OsAffx.17201.1.S1_at--828--7251Chr08:17051578..17051602 (25 bp)
GTCCATACCACTCGAGATAAGTACA
LOC_Os08g28150
OsAffx.17201.1.S1_at--15--6451Chr08:17051563..17051587 (25 bp)
GATAAGTACAAATTCGGCATGCGTG
LOC_Os08g28150
OsAffx.17201.1.S1_at--83--9451Chr08:17051550..17051574 (25 bp)
TCGGCATGCGTGTAATTGAAGAAAT
LOC_Os08g28150
OsAffx.17201.1.S1_at--1073--5571Chr08:17051530..17051554 (25 bp)
GAAATGAGGTCATCTGCAAACAAGA
LOC_Os08g28150
Target Sequence 
ATGTTGCTTTTCTATCCTTTGCATTAGCCAAACTACACTTGTATAGAGTACCACAGGTTACCACAAAAATATCTGAAGAT
TATGCTCTTCACCCTCCTGTCCATACCACTCGAGATAAGTACAAATTCGGCATGCGTGTAATTGAAGAAATGAGGTCATC
TGCAAACAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17201.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis