Browse Element(s) Details


OsAffx.29392.1.S1_at

Description tigr:9636.m02785
TID=OsAffx.29392.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2816011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g28130NANA8+17031293..17036644hypothetical protein
LOC_Os08g28140Os.46012.2.S1_x_at4/118+17038863..17040428hypothetical protein
LOC_Os08g28140Os.46012.3.S1_x_at1/118+17038863..17040428hypothetical protein
LOC_Os08g28140Os.27088.1.A1_x_at1/118+17038863..17040428hypothetical protein
LOC_Os08g28150OsAffx.17201.1.S1_at10/118+17051492..17053073hypothetical protein
LOC_Os08g28160OsAffx.29392.1.S1_at11/118+17054441..17055775hypothetical protein
LOC_Os08g28170OsAffx.29393.1.S1_x_at11/118+17060489..17063020xanthine/uracil permease family protein, expressed
LOC_Os08g28170Os.14457.1.S1_at11/118+17060489..17063020xanthine/uracil permease family protein, expressed
LOC_Os08g28180Os.24203.1.A1_at11/118+17066467..17070235pentatricopeptide, putative, expressed
LOC_Os08g28190OsAffx.29394.1.S1_s_at11/118+17071842..17076528Actin-like protein 2, putative, expressed
LOC_Os08g28190OsAffx.29394.1.S1_at9/118+17071842..17076528Actin-like protein 2, putative, expressed
LOC_Os08g28200Os.52946.1.S1_at4/118+17078872..17079543expressed protein
LOC_Os08g28200OsAffx.13417.1.S1_x_at1/118+17078872..17079543expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29392.1.S1_at--445--2751Chr08:17055253..17055276 (24 bp)
AAGACATTTCAAGCGTTACGTTGCC
LOC_Os08g28160
OsAffx.29392.1.S1_at--678--4631Chr08:17055264..17055288 (25 bp)
GCGTTACGTTGCCAGCAGTATGCAG
LOC_Os08g28160
OsAffx.29392.1.S1_at--762--1191Chr08:17055280..17055304 (25 bp)
AGTATGCAGGGCAACTTTTCCCCTC
LOC_Os08g28160
OsAffx.29392.1.S1_at--76--10311Chr08:17055296..17055316 (21 bp)
TTTCCCCTCTATTTAAAGGTAGCTG
LOC_Os08g28160
OsAffx.29392.1.S1_at--456--10491Chr08:17055548..17055568 (21 bp)
TTAAAGGTAGCTGCCATCTCATGCC
LOC_Os08g28160
OsAffx.29392.1.S1_at--38--4791Chr08:17055553..17055577 (25 bp)
GCTGCCATCTCATGCCTATTGAGAG
LOC_Os08g28160
OsAffx.29392.1.S1_at--1157--6331Chr08:17055588..17055612 (25 bp)
GATGCTATCATTTTTGCGCGTAACC
LOC_Os08g28160
OsAffx.29392.1.S1_at--708--10071Chr08:17055601..17055625 (25 bp)
TTGCGCGTAACCATGAACCGTCAAC
LOC_Os08g28160
OsAffx.29392.1.S1_at--864--2611Chr08:17055616..17055684 (25 bp)
AACCGTCAACGGCTTGCAGTTGTTC
LOC_Os08g28160
OsAffx.29392.1.S1_at--553--5031Chr08:17055675..17055699 (25 bp)
GCAGTTGTTCTTTTTGCACAGTTCA
LOC_Os08g28160
OsAffx.29392.1.S1_at--1015--5111Chr08:17055690..17055714 (25 bp)
GCACAGTTCATGTTGACAGATCTAG
LOC_Os08g28160
Target Sequence 
AAGACATTTCAAGCGTTACGTTGCCAGCAGTATGCAGGGCAACTTTTCCCCTCTATTTAAAGGTAGCTGCCATCTCATGC
CTATTGAGAGTTATGGTAAAGATGCTATCATTTTTGCGCGTAACCATGAACCGTCAACGGCTTGCAGTTGTTCTTTTTGC
ACAGTTCATGTTGACAGATCTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29392.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis