Browse Element(s) Details


OsAffx.29395.1.S1_at

Description tigr:9636.m02791
TID=OsAffx.29395.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2821411/11Tesmin/TSO1-like CXC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g28170OsAffx.29393.1.S1_x_at11/118+17060489..17063020xanthine/uracil permease family protein, expressed
LOC_Os08g28170Os.14457.1.S1_at11/118+17060489..17063020xanthine/uracil permease family protein, expressed
LOC_Os08g28180Os.24203.1.A1_at11/118+17066467..17070235pentatricopeptide, putative, expressed
LOC_Os08g28190OsAffx.29394.1.S1_s_at11/118+17071842..17076528Actin-like protein 2, putative, expressed
LOC_Os08g28190OsAffx.29394.1.S1_at9/118+17071842..17076528Actin-like protein 2, putative, expressed
LOC_Os08g28200Os.52946.1.S1_at4/118+17078872..17079543expressed protein
LOC_Os08g28200OsAffx.13417.1.S1_x_at1/118+17078872..17079543expressed protein
LOC_Os08g28214OsAffx.29395.1.S1_at11/118+17081287..17088397Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os08g28214Os.53233.1.S1_at11/118+17081287..17088397Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os08g28214Os.7693.1.S1_s_at11/118+17081287..17088397Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os08g28230OsAffx.5963.1.S1_at11/118+17092535..17094947Iron-sulfur cluster assembly accessory protein
LOC_Os08g28240OsAffx.17202.1.S1_at10/118+17096324..17102645Retinal pigment epithelial membrane protein
LOC_Os08g28250OsAffx.17203.1.S1_at11/118+17107318..17108390hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29395.1.S1_at--559--6651Chr08:17081509..17081533 (25 bp)
GTTGACAAAGAACATGGCGTGCCAA
LOC_Os08g28214
OsAffx.29395.1.S1_at--553--10731Chr08:17081508..17081532 (25 bp)
TTGACAAAGAACATGGCGTGCCAAC
LOC_Os08g28214
OsAffx.29395.1.S1_at--759--2594Chr09:21164112..21164136 (25 bp)
AACGCTACGGTGCAATTCCATTGTC
NONE
OsAffx.29395.1.S1_at--667--1832Chr09:21164111..21164135 (25 bp)
ACGCTACGGTGCAATTCCATTGTCT
NONE
OsAffx.29395.1.S1_at--463--4133Chr07:4472872..4472895 (24 bp)
CGCTACGGTGCAATTCCATTGTCTT
NONE
OsAffx.29395.1.S1_at--380--4853Chr07:4472872..4472896 (25 bp)
GCTACGGTGCAATTCCATTGTCTTT
NONE
OsAffx.29395.1.S1_at--1126--3715Chr07:4472873..4472897 (25 bp)
CTACGGTGCAATTCCATTGTCTTTA
NONE
OsAffx.29395.1.S1_at--862--9936Chr07:4472874..4472898 (25 bp)
TACGGTGCAATTCCATTGTCTTTAA
NONE
OsAffx.29395.1.S1_at--908--1914Chr07:4472875..4472899 (25 bp)
ACGGTGCAATTCCATTGTCTTTAAT
NONE
OsAffx.29395.1.S1_at--714--7773Chr07:4472877..4472901 (25 bp)
GGTGCAATTCCATTGTCTTTAATAA
NONE
OsAffx.29395.1.S1_at--113--8993Chr07:4472879..4472903 (25 bp)
TGCAATTCCATTGTCTTTAATAACT
NONE
Target Sequence 
GTTGACAAAGAACATGGCGTGCCAACGTATTTGATTAGCATATTATTACAATTTCATACCAGGTATAAAGTAACTACACT
TTCCTGCATATGCCATGTTCTTTGTCAAATACCTGGTGCTTGCCTGTTATACGTTTTAGCACTATGTATACTAGTAATAT
GCCCGTGCTAAACGCTACGGTGCAATTCCATTGTCTTTAATAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29395.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis